Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02561 ATGCAGTCTCTGAAGGTCGAAATTTACCACGAGATTCTTAGTCGACTTAGGGAATTGAATGCCCCAGAGGTTACTGTTCCTGATTTTGAAGATGAACTTTGGGTGCACTTCTATCGCCTTCCCACTAGGTATGCACTGGATATGAAGGTGGAGAGGGCCCAGGATGTTCTTATGCATAAAAGGTTACAGCATTTGGCACGAGCTCTTGCTAGTAGACCTGCAATTGAAGTCCGTCTTGTGCAGGCTTGTTCTGCTTCTGGCGTGGATTCTAGTAAATCCCTTCATTCTAACTTACAAAGAGAAATCAGTCCTGAAGATCCTAATATTCCCAGCAACATGAGTATCCATCCATCTTCGGCCTTTGGTTCATCAACTAACTTGAACTTGATCTTGGTGCGAGCCAGTTACAAGCCAATGCATGAAATCACAATATCAACAAACGATAAGCCAAAACTTTTCAGCAAGTTGACTTCCTTACTGTCTGAGACTGGACTGAATATTCTAGAAGCACATGCTTTTTCCACGTTGGATGGATATTCATTGGATGTTTTTGTTGTTGATGGTTGGGCAGTGGAGGAGACTGAGAAGCTAAAACATGAACTGACAAGGAAAATGCAGAAACTCGAGGAGACTGATGAGAAGCTAAAACATGTTCCGACAAAGAAAATTAAGATACTCGAGAAGCAGCCTTGGTGCAGTCTTCCTAAGGAGAACCAAGAGCAAACTGGTATCAACTGTATCTCTAACCACGTAAACATGCCCATCAGTGAAAATGTTGTCTGGGAAATTGAGACAAGCTGTCTAAGATATGAAAAGAAAATTGCATCTGGATCTGTCAGTGATTTGTATAAAGGCACTTACTGTAATCAAGATGTGGCTATCAAAGTCTTTAAGGATGGTAATCTGAATGAAGATACACTGAGGGAGTTTTCTCAGGAAGTCTATATCCTAAGTAAAATTCAGCACAAGAATGTTATCCAATTTATTGGTGCCTGTACAAAACCAAACCTTTGCCTTGTCACAGAATATATGTTTGGTGGAAATATGCATGACTTTCTGCATATACAGAAGGTCGTCCTTACTCTTCCATCTTTGCTCAAAGCAGCAAATGATGTTTCCGAAGGAATGAATTATTTGCATCAGAATGATATTATACATCGAGACCTCAAAGCTGCTAATCTTTTGATGGATGAGAAAGGGGTGGTTAAGGTTGCTGATTTTGGTGTAGCTAGATTGCAAGATCATTCTGGTATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGGTCATTGAACATAAGCCATATAATCACAAAGCCGATGTTTTCAGCTTTGGGATTGTTCTTTGGGAGCTGCTCACAGGAAAGCTTCCTTATGAACATTTGTCCCCATTGCAAGCAGCAGTCGGAGTGGTACAGAAGGATTTGAGGCCTGAAATCCCAAGAGATACTCATCCAAAGTTAGTGGAATTGCTTCACCGGTGCTGGCACAATGATCCATCTTTAAGACCCGATTTCTCAGAAATTCTGATATTTCTGCAGCACATTAACAAGATGGTTCCAGGGAAGAGGAAGGTGAAGGCAAAGCGAATGCATGAGAACATGTAA 1617 0.415 MQSLKVEIYHEILSRLRELNAPEVTVPDFEDELWVHFYRLPTRYALDMKVERAQDVLMHKRLQHLARALASRPAIEVRLVQACSASGVDSSKSLHSNLQREISPEDPNIPSNMSIHPSSAFGSSTNLNLILVRASYKPMHEITISTNDKPKLFSKLTSLLSETGLNILEAHAFSTLDGYSLDVFVVDGWAVEETEKLKHELTRKMQKLEETDEKLKHVPTKKIKILEKQPWCSLPKENQEQTGINCISNHVNMPISENVVWEIETSCLRYEKKIASGSVSDLYKGTYCNQDVAIKVFKDGNLNEDTLREFSQEVYILSKIQHKNVIQFIGACTKPNLCLVTEYMFGGNMHDFLHIQKVVLTLPSLLKAANDVSEGMNYLHQNDIIHRDLKAANLLMDEKGVVKVADFGVARLQDHSGIMTAETGTYRWMAPEVIEHKPYNHKADVFSFGIVLWELLTGKLPYEHLSPLQAAVGVVQKDLRPEIPRDTHPKLVELLHRCWHNDPSLRPDFSEILIFLQHINKMVPGKRKVKAKRMHENM* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02561 538 SUPERFAMILY ACT-like 138 209 IPR045865 -
Rops9g02561 538 Gene3D Transferase(Phosphotransferase) domain 1 346 538 - -
Rops9g02561 538 Gene3D Phosphorylase Kinase; domain 1 259 344 - -
Rops9g02561 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Rops9g02561 538 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 103 526 - -
Rops9g02561 538 PRINTS Tyrosine kinase catalytic domain signature 378 396 IPR001245 GO:0004672|GO:0006468
Rops9g02561 538 PRINTS Tyrosine kinase catalytic domain signature 341 354 IPR001245 GO:0004672|GO:0006468
Rops9g02561 538 PRINTS Tyrosine kinase catalytic domain signature 424 434 IPR001245 GO:0004672|GO:0006468
Rops9g02561 538 PRINTS Tyrosine kinase catalytic domain signature 443 465 IPR001245 GO:0004672|GO:0006468
Rops9g02561 538 PRINTS Tyrosine kinase catalytic domain signature 487 509 IPR001245 GO:0004672|GO:0006468
Rops9g02561 538 ProSiteProfiles Protein kinase domain profile. 268 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02561 538 ProSiteProfiles ACT domain profile. 141 222 IPR002912 -
Rops9g02561 538 FunFam Serine/threonine-protein kinase isoform 1 258 345 - -
Rops9g02561 538 SMART serkin_6 268 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02561 538 Coils Coil 191 218 - -
Rops9g02561 538 Pfam Protein tyrosine and serine/threonine kinase 269 513 IPR001245 GO:0004672|GO:0006468
Rops9g02561 538 SUPERFAMILY Protein kinase-like (PK-like) 255 524 IPR011009 -
Rops9g02561 538 CDD STKc_MAP3K-like 274 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02561 Rops-Chr9 48052181 48060475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02561 4 523 MAP Kinase Kinase Kinase AT2G17700 55.888 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Rops9g02561 PK_Tyr_Ser-Thr 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02561 - - gmx:100818047 694.115