LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g02556	ATGAATGCATTGGTTAATTGCAAATTGGAAATCAGCATCGCCTCCTTCTCAATCAACCTCTTCTCCAAGTTTCTCGAACGATCATCGCATCCATCTTCGGTGACGTACCGACGGTATCTTCTCCTACTCAATATTAGTTACTTTGGTATCGTATTGGCGGGTTCTGGCAATATTTCAGCAGAGTGTTTAGATTCAACTGTTCAGCTTAATATCAAGACTCTAGATTCTCGCATCTACAGTTTTAACGTGGACAAAAATATGCCCATTTCATTGTTCAAGGAGAAAATTGCAAATGAAGTTGGTCTTCCAGTTAATCAGCAACGGCTGATTTTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCCCAGGCTTCTGGTATGAGATCTGGCGAGTCAACTGGTACCAATGGTAACCGAGGAAATGATGTGGGCTCAGGGGCTCCTCGTAACCGTGTTGGGCAAATTTCTCACAGTGTTGTTCTTGGGACTTTTAATGTTGGGGAACAAGGTGAAGGCATGGCTCAAGACCTCACTCGGGTTATTGGGGCACTATTGAATTCTATTGCAAATGGTGGCCAGAGCACAATTAGTGTTCCTAATGCTACACAAACTTTTTCAGCTCCACCAGGGAATGAAACTGAAGGAATGCATGCTGGAAATCAAAACCTAACAGGAAATCAGGCACCATCTGGACAGACATTTCCTGGTCAGGCCTTCCAATCTCTGCCTCAAGTTGTTCAGATTCCTATTGCTGCAGGAGCCATACCTGTTCCTTCTCTCAATGCACCAATTCCTGATTCATTGAACACGCTGTCTGAGTTTATAAATCGCATGGAACAGACACTATCACAAAATGGTTATGGGCCAAATCTCTCTTCAACTAACCCTGGAGATCAACGAGTGGAATTGCCTTCCAATACACAAGGGCTGCCCACACTTGAAGCATTAAGCACCGTCTTGCATCGTGCAGAACGGTTGCTTAATGGTCATGCTGTCGCTGCACTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACTTCCAATGATCAAGGTGTAAGGAGTCAAATACAATCAGAGTCAATGCAGATAGGAGTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGAACAATGTTGACACTGCGCATGGGACAGTCTTCTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCCGTCAGGTCCAAATCCTATAATGGTGCAGCCCTTTCCACTTCAGACAAGCTCCCTCTTTGGTGGTCCTGTTCCTTCTTCAACTCCTACAACTTTAGGTGCAGTTGGTATTGGAAGTGCTCCTAGGAACGTAAACATTCACATACATGCTGGTACCTCTCTTGCACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGACAAGAAGTGAACACCGTAATGAGCCTGGCTCTGGTGATTCAGGTTCAACACGGGTATTACCTGTTAGACATGTCATATCAGCAACTCTTCCATCAAACCCTCCTGGTGTTGGAGTAGCTAGTAACACACAAACAGGATTTGGTATTTCTACTTCACAGCTACCACCTGTTTCAGCTCCACTTTCGTCTGTTTTAGCTGAAATCCATTCTCGCCTTAGAAACTCTATTGGTAATATGCAAGGAGATAATGCAGTTGTGTCAGTCCAAAGGGAATCCACTAGCAGGGACTTGTCTTCTGGATCTGAATCTAGAGCTGCACCAGGAAATGAACAAGATACCATGGAGAAGCATGGCTATGGGGCTGCCAATGCATCCTCGGTTGGTTCCACTTCTGAAAATGGAGTAGAGAAGCCCCAAACTGAGGCAATCCAAGCCTGTAGTAATCACGAGTGGGATGTCTTGGCCGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAGTGGTTCCAGTGAAGAAACAATAGTAAAATCAGAGATAGTACAGGACGCTCCATCTGTAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAGCTGCTCCTCTAGGATTGGGGGTGAGTGGTTTGGAGCGTAAGAGGCGAACTAAACCTCAACCTCCTGGAGGTAAAGGTCCTGATGATGGATCTTCCAGTTCTTCCATCAATCAAAGTCAGCAAACCAGAACAGATGGTCAACATATACTGCAAAGTCTTATGAGTCATGGATCTGCTGTTTTACATAGCCCCACTTTGAATAATTTGTTGGAAGGGGTCTCACAGCAAACTGGAGTTGACTCACCTGATGGCTTGAGGAACATGTTGCAGCAGTTCACGCAGAGCCCACAGATGATGAACACGGTCAATCAGATTGTTCAACAGGTTGGCAATCAGGATATGGGGAATATGTTAACTGGAATGGAAAGAGGGCAGGGTGGTGGTATTGACTTGTCGAGGATGTTTCAACAGATGATGCCTATTGTATCTCGAGCCCTTGGTGGGGGAAATCCTCCCTCACTATTTTCTGCTGCAGAAACAGAACCCCATGTACCTTACAGAGATGGAACACTTAACAGAGATGAAAACTCTGATGATCAAAGTTTACAGCTTGACCTTCAACCAGTGGCAGAGAGGATCAATCGCCTGAGTCCACCTACAGATGTGTTCCGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCAATGGAAGTGCTTCTATTGATCTTCTGGATGAGTTGTGCCGCAGCGCGAGTCTTGCCAGTGAATATGTGGAGATGTTGCGATATGATGTAAGTCAGCGGCTTGAGGGACATTCTGAGCCGGACAAGTCCTGA	2862	0.4497	MNALVNCKLEISIASFSINLFSKFLERSSHPSSVTYRRYLLLLNISYFGIVLAGSGNISAECLDSTVQLNIKTLDSRIYSFNVDKNMPISLFKEKIANEVGLPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQASGMRSGESTGTNGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGMAQDLTRVIGALLNSIANGGQSTISVPNATQTFSAPPGNETEGMHAGNQNLTGNQAPSGQTFPGQAFQSLPQVVQIPIAAGAIPVPSLNAPIPDSLNTLSEFINRMEQTLSQNGYGPNLSSTNPGDQRVELPSNTQGLPTLEALSTVLHRAERLLNGHAVAALSHIAGRLEREGTSNDQGVRSQIQSESMQIGVAMQHLGALLLELGRTMLTLRMGQSSAESVVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGPVPSSTPTTLGAVGIGSAPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGTRSEHRNEPGSGDSGSTRVLPVRHVISATLPSNPPGVGVASNTQTGFGISTSQLPPVSAPLSSVLAEIHSRLRNSIGNMQGDNAVVSVQRESTSRDLSSGSESRAAPGNEQDTMEKHGYGAANASSVGSTSENGVEKPQTEAIQACSNHEWDVLADKFVSSSSNQDLQSGSSEETIVKSEIVQDAPSVSERRDVTEPAKAAPLGLGVSGLERKRRTKPQPPGGKGPDDGSSSSSINQSQQTRTDGQHILQSLMSHGSAVLHSPTLNNLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQQVGNQDMGNMLTGMERGQGGGIDLSRMFQQMMPIVSRALGGGNPPSLFSAAETEPHVPYRDGTLNRDENSDDQSLQLDLQPVAERINRLSPPTDVFRAVAENAVQLSGNGSASIDLLDELCRSASLASEYVEMLRYDVSQRLEGHSEPDKS*	954

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g02556	953	SUPERFAMILY	Ubiquitin-like	61	141	IPR029071	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	577	604	-	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	657	674	-	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	135	164	-	-
	Rops9g02556	953	ProSiteProfiles	Ubiquitin domain profile.	67	142	IPR000626	GO:0005515
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	619	635	-	-
	Rops9g02556	953	FunFam	Large proline-rich protein BAG6	59	152	-	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	722	741	-	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	486	514	-	-
	Rops9g02556	953	Pfam	Ubiquitin family	69	139	IPR000626	GO:0005515
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	657	741	-	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	220	258	-	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	135	172	-	-
	Rops9g02556	953	SMART	ubq_7	67	138	IPR000626	GO:0005515
	Rops9g02556	953	PRINTS	Ubiquitin signature	119	140	IPR019956	-
	Rops9g02556	953	PRINTS	Ubiquitin signature	98	118	IPR019956	-
	Rops9g02556	953	MobiDBLite	consensus disorder prediction	577	635	-	-
	Rops9g02556	953	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	56	952	-	-
	Rops9g02556	953	Gene3D	-	57	151	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops9g02556	Rops-Chr9	47893167	47905454	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops9g02556	67	138	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.278	6.83e-11	59.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g02556	-		-	gmx:100811870	1366.67