Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02547 ATGGAGCAAGGTAAGATCAACCCAAGAAGTGGCTTCTGCAGCGCCAATTCAGTATTCTACAGTAAGCGTAAGCCACTTCCACTCCCTCCAAAGCACTCTTTAGATGTCACCACTTTCATCTCCTCACGCGCCCACCATGGCAAAACCGCCTTCATCGACGCCGCCACCGGCCGACACTTCACCTTCCAACAGCTCTGGACAGCCGTGGACGCCGTCGCCTCCTCTCTCTCCGACATGGGGATCAGAAAAGGCAACGTGGTCCTCCTCCTCTCTCCAAATTCCATATTCTTCCCCGTTGTATGCCTCGCCGTCATGTCCCTCGGCGCCGTCATCACAACCACCAACCCTCTCAACACCACCAGCGAAATCGCCAAACAGATCGCCGATTCTAAACCTGTTCTTGCTTTCACAATCCCTCCTCTGGTCCCCAAAATCAACGGCGCATCACCCACCCTCCCAATTGTCCTCATAGATACTGAGTCCGTTTCAGTTTCAGTTTCAGTTTCACAAGCTAAAATCGTCACCACACTGAACGAGATGATGAAGAAGGAACCCGAGTCGACCCGAGTGAGGGAGCGAGTCGACCAGGACGACACGGCCACGCTGTTATACTCTTCTGGCACGACGGGACCCAGCAAAGGCGTGGTTTCGTCGCATAAGAATCTGATGGCGATGGTCCAAATCGTTTTGGGTAGGTTCAGTAAGGAAGATGAGCAAACCTTCATTTGCACGGTGCCCATGTTTCATATATACGGTTTGGCGGTGTTTGCGACGGGGCTTCTTGCTTCGGGATCAACCATCGTTGTGCTGTCTAAGTTCGAGATGCACGATATGCTGTCGGCGATTGAGAGGTTTCGAGCCACGTTTCTTCCGCTTGTGCCGCCCATACTGGTGGCGATGATCAACAACGCCGATGCGATTAAGGCCAAGTACGATTTGAGGTCCCTGCATACAGTTCTCTCCGGTGGGGCTCCGCTCAGTAAGGAGGTGACAGAAGGGTTTGTGGAGAAGTACCCCAACGTTACTATTCTTCAGGGTTATGGCTTGACGGAATCATCTGGAGTTGGGGCTTCCACCGACTCATTGGACGAGAGTCGAAGGTACGGCACGGCGGGGTTGCTTTCCCCTGCCACCGAGGCTATGATTGTTGACCCTGAAACCGCTCAACCGCAGCCGGTTAACCGGACCGGTGAGCTCTGGCTTCGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAGGAAGCAACCTCATCAACCCTTAATTCAGAAGGATGGTTAAGAACAGGGGATATTTGCTACATTGATGATGATGGATTCTTATTTGTTGTTGATCGGTTGAAAGAGCTCATTAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCCTTGTTGCTGACTCATCCTGCTATTTTGGATGCTGCTGTCATACCGTATCCAGATAAGGAGGTTGGGCAATATCCAATGGCATATGTGGTAAGGAAGGCTGGAAGTAGCATATCAGAAAAAGAAGTTATGGATTTTGTTGCAGGACAGGTGGCTCCGTACAAAAAAATTCGAAAAGTGGCTTTCATATCTTCCATACCCAAAAATGCATCTGAAACAGATGATTCTTTATCTAATTCCCTTTTTAGCTCTAATTTTATGGCTTGTTTATTTTTGTTGATATAA 1677 0.4973 MEQGKINPRSGFCSANSVFYSKRKPLPLPPKHSLDVTTFISSRAHHGKTAFIDAATGRHFTFQQLWTAVDAVASSLSDMGIRKGNVVLLLSPNSIFFPVVCLAVMSLGAVITTTNPLNTTSEIAKQIADSKPVLAFTIPPLVPKINGASPTLPIVLIDTESVSVSVSVSQAKIVTTLNEMMKKEPESTRVRERVDQDDTATLLYSSGTTGPSKGVVSSHKNLMAMVQIVLGRFSKEDEQTFICTVPMFHIYGLAVFATGLLASGSTIVVLSKFEMHDMLSAIERFRATFLPLVPPILVAMINNADAIKAKYDLRSLHTVLSGGAPLSKEVTEGFVEKYPNVTILQGYGLTESSGVGASTDSLDESRRYGTAGLLSPATEAMIVDPETAQPQPVNRTGELWLRGPTIMKGYFSNEEATSSTLNSEGWLRTGDICYIDDDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPAILDAAVIPYPDKEVGQYPMAYVVRKAGSSISEKEVMDFVAGQVAPYKKIRKVAFISSIPKNASETDDSLSNSLFSSNFMACLFLLI* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02547 558 Pfam AMP-binding enzyme 43 453 IPR000873 -
Rops9g02547 558 CDD 4CL 28 535 - -
Rops9g02547 558 Gene3D - 449 538 IPR045851 -
Rops9g02547 558 FunFam Long-chain-fatty-acid--CoA ligase FadD 20 448 - -
Rops9g02547 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 535 - -
Rops9g02547 558 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Rops9g02547 558 FunFam 4-coumarate--CoA ligase 2 449 538 - -
Rops9g02547 558 SUPERFAMILY Acetyl-CoA synthetase-like 43 535 - -
Rops9g02547 558 Gene3D - 17 448 IPR042099 -
Rops9g02547 558 Pfam AMP-binding enzyme C-terminal domain 462 535 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02547 Rops-Chr9 47768362 47771917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02547 6 535 Monolignol Biosynthesis Gene Families AT1G20500 67.232 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02547 K10526 - gmx:100811344 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02547 9 47768362 47771917 Rops9g02547 9 47768362 47771917 ECH