LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops9g02543	ATGCACATGCATGGATTCAGAGCAAGGATTGCTCTGTGCTCATCTTCAATTTGTAAATCAAAGTGGCATCATCACCATGTCCATAGAGGCGAAATCGAATCCTCTCGAAATCTCTCCACCACCACAACAGGTCCTGAATTTATGGAACCTGTGGCGGGACCGTCTTTGCAAAAGCAAATTTTGAAGGCACTCTGCTTGGGTGAGAGAAAAATGGCTTCCGACTTACTTTTGGATTTTGGTCACAGAAGCCACTCATTGGCAGCTGATGATTTTGTTGATATTTTTAAGCACTGTGCACGGTCTCCTGATCCATTGTTTGTGATGGAGATTTGGAGATTAATGGAGTCAAAAGACGTTAGAATGAATTATATATGCTTCTCTCTTATGATGCAGGCCCTTTGTAAAGGGGGTTACTTGGAAGAGGCCTTTAATATGATGGATTTTCTTGGAGAAAGTCGACGTCTCTATCCAGTCCTCCCATTGTACAATAGTCTTTTAAGATCCTGCACAAAAATGCGGAGTATAATTCAAGCTAGCAAATGTTTGGACTTGATGGAAAAGCAGATGGTAGGAAAGAATGAAGTTACATATACTGAGCTTCTCAAGCTTGCAGTTTTGCAGAAAAACTTGTCTGCTGTCCATCTAATTTGGCAGGAGTATATTAAACACTACAGTATGGGTATAATTGCTCTGCGTAAATTCATTTGGTCATTTACAAGGTTGGGAGATTTAAAATCTGCATATAAAACGCTACAACAAATGGTGTCAATAGCCATGGTGGAGCACATTTCTATTGCTAGAACAGTTCATGGGAAGTTGTATTCTACTAGATTGGATATCCCTGTACCTTCAAATAAAGAGCTAGGCTCAACCATATTGGACTTGAAGAAGAATAAACAACCGGACTCTTGTATACATCCTCCTCTTGTGTATTTACCAGATGCAACGTCTGCAAGTATAGAGCAGCAAATTATTCGTATGGGAAATAAAAATGCTAAGAGTGCTGACATAGATGGGCTTAATGGACAAAAACACTCACTGCTTACGAAGGTTTTGAGGTGGTCTTTTAATGATATAATACACGGGTGTGCAAAACAAAAGAATTATATGCTTGCAATGAAGCTTATATTAGAGATGCAAAATCTTGGTTTGCAGCCATCCAGCCATACATATGATGGTATTATTAGAGCAGTTGTTTCTCAAAGAAGTTTTGCGGATGCCATGGGATTGGTAAAAAAAATGCAGCAGGAAAATTTGAAGCCATATGATTCAACTCTAGCAACACTTTCAGTCGCTTGCAGCCAAGCACTACAACTAGATTTAGCTGAGTCTTTGCTGAATCGGATATCTGAATGTCAATGTCCACATCCTTATAATGCTTTGCTAGCATCATGTCATGCACTGAATCAACCTGAGCGTGCTGTTCGAGTGTTTGCCAAGATGAAGCAGATAAAACTTTTACCTGATATCAGGACATACGAGCTTCTATTTTTGTTATTTGGTATGGTGAATGCCCCATATGAAGACAGTAATATGCTGTCACAGGTCGATGCTGCTAAAAGAATAAATGCTATAGAAAGGGATATGGCCAAAAATGGCTTTCAGCACAGTCATCTTTCAATGAAAAACTTATTGAAAGCCCTTGGAGAAGAAGGGATGATAAGAGAGCTGATCCATTATTTACATTTGGCAGAGAGTCTTTTCATTTATAGAAACCCTTCATTGGGAACAGATATGTACAACTTGGTGTTGCATTATCTTGTTGAAGCCAAAGAAAGTCACATGGCAATTGAAATTTTCAAGAAGATGAAGTTATGTGGCTGCCACCCTGATTCGGCAACATACAATATAATGATTGACTGTTGCAGCGTCCTAAGAAGTTATAAAGCTGCTTCTTTGTTGTTATCAATGATGATACGCGAAGGGTTTTCTCCAGTGACTTGTACATATACTGCTCTCATTAAGATTTTGGTGGACGACGAGAACTTTAATGAAGCCCTGAATCTTTTGGAACGAATCAGATTGGATGGCATCCAACTTGATGTATTGTTGTTTAATACATTTCTTCGACAAGCATGTTACAAGGGAAGGATCGATGTAATTGAGTTTATTGTGGAGTCTATGCACCGAGAGAAAATTCAGCCTAATCCAGCAACATGCGGCTATGTCTTCTCTGCATATGTAAACACTGGTTTTCACAATACAGGAATAGAAGCATTGCAGGTTTTAAGTTTGCGTATGATGTCTGAAGATGACAACATACTTGGAGAGAAGAAGAAATTTGTGGATGAATTCATCCTTGCTGAAGATTTGGCTGCTGACTCACATATACTTAAATTATTTGAAGATTCTGAAGATGAACTTGCAGTTGGGTTGTTCAATTTAAGATGGTGTGCCGTACTTGGGTTCCCAATTTGTGAGTCAGCTGATCAAAGCCTGTGGGCTAAAAGACTCGAGTTACAATTCAGCGAGAGGCTAGAGGCTGGTTCCTCAAGGGGAAAGCAATTGTGA	2511	0.3939	MHMHGFRARIALCSSSICKSKWHHHHVHRGEIESSRNLSTTTTGPEFMEPVAGPSLQKQILKALCLGERKMASDLLLDFGHRSHSLAADDFVDIFKHCARSPDPLFVMEIWRLMESKDVRMNYICFSLMMQALCKGGYLEEAFNMMDFLGESRRLYPVLPLYNSLLRSCTKMRSIIQASKCLDLMEKQMVGKNEVTYTELLKLAVLQKNLSAVHLIWQEYIKHYSMGIIALRKFIWSFTRLGDLKSAYKTLQQMVSIAMVEHISIARTVHGKLYSTRLDIPVPSNKELGSTILDLKKNKQPDSCIHPPLVYLPDATSASIEQQIIRMGNKNAKSADIDGLNGQKHSLLTKVLRWSFNDIIHGCAKQKNYMLAMKLILEMQNLGLQPSSHTYDGIIRAVVSQRSFADAMGLVKKMQQENLKPYDSTLATLSVACSQALQLDLAESLLNRISECQCPHPYNALLASCHALNQPERAVRVFAKMKQIKLLPDIRTYELLFLLFGMVNAPYEDSNMLSQVDAAKRINAIERDMAKNGFQHSHLSMKNLLKALGEEGMIRELIHYLHLAESLFIYRNPSLGTDMYNLVLHYLVEAKESHMAIEIFKKMKLCGCHPDSATYNIMIDCCSVLRSYKAASLLLSMMIREGFSPVTCTYTALIKILVDDENFNEALNLLERIRLDGIQLDVLLFNTFLRQACYKGRIDVIEFIVESMHREKIQPNPATCGYVFSAYVNTGFHNTGIEALQVLSLRMMSEDDNILGEKKKFVDEFILAEDLAADSHILKLFEDSEDELAVGLFNLRWCAVLGFPICESADQSLWAKRLELQFSERLEAGSSRGKQL*	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops9g02543	836	NCBIfam	pentatricopeptide repeat	614	645	IPR002885	-
	Rops9g02543	836	NCBIfam	pentatricopeptide repeat	579	612	IPR002885	-
	Rops9g02543	836	NCBIfam	pentatricopeptide repeat	355	387	IPR002885	-
	Rops9g02543	836	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	387	421	IPR002885	-
	Rops9g02543	836	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	576	610	IPR002885	-
	Rops9g02543	836	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	611	645	IPR002885	-
	Rops9g02543	836	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	454	488	IPR002885	-
	Rops9g02543	836	Gene3D	Tetratricopeptide repeat domain	574	763	IPR011990	GO:0005515
	Rops9g02543	836	Gene3D	Tetratricopeptide repeat domain	349	455	IPR011990	GO:0005515
	Rops9g02543	836	Gene3D	Tetratricopeptide repeat domain	456	573	IPR011990	GO:0005515
	Rops9g02543	836	Gene3D	Tetratricopeptide repeat domain	57	277	IPR011990	GO:0005515
	Rops9g02543	836	Pfam	Pentatricopeptide repeat domain	458	501	IPR002885	-
	Rops9g02543	836	Pfam	Pentatricopeptide repeat domain	669	729	IPR002885	-
	Rops9g02543	836	Pfam	PPR repeat	162	187	IPR002885	-
	Rops9g02543	836	Pfam	PPR repeat	125	147	IPR002885	-
	Rops9g02543	836	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	352	386	IPR002885	-
	Rops9g02543	836	Pfam	PPR repeat family	355	398	IPR002885	-
	Rops9g02543	836	Pfam	PPR repeat family	579	622	IPR002885	-
	Rops9g02543	836	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	21	819	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops9g02543	355	785	Glycosyltransferase	AT1G05670	19.579	3.44e-12	68.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops9g02543	-		-	vun:114194590	1204.12

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops9g02543	9	47718093	47727090	Rops9g02543	9	47718093	47727090	ECH