Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02513 ATGTTGAAGACGAAGGCATTTAACGGCGCTAACGTGTTCATGTCGCGAAACCTGGTGCCGCCTGAAGTCTTCGACGCGCTCCACGATGCCGTTAAAGTTAACGGCGCCCATATCCACCTTTGTTGCGATCCTTCACGCAATGGCCCCAACGATTACCACATCATTTCTTGTAGTAAACACGAGAAGTTTGAGGATCTTAAATCCAAGGGCTGTAAATTACTCGGCCCTAGATGTGTTCTTTCGTGTGCTAAAGAACAAAGGCCTCTGCCTAAACAAGGCTTCACTTGTTGTCTTGCCATGGATGGTGTCAAAGTACTTGCTTCTGGCTTTGATGCGGATGAGAAGGTTAAGATAGAAGAGTTAGTGACTGAAATGGGGGGAGTTCTACACACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTAACTCATGAATGGTTAAAGCAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCCGGGTTAAAGATTTGTGTAACTGGAATTCCAGCAGATAAGCGCAAAGAGATGGAAAAACTTATCTTACAAAATGGTGGAAAATACTCTGCAGAACTGACAAAGAAGTGCTCGCATTTGATTTCTGATACTCCTGAAGGTGACAAATATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACAACGAAATGGTTTGTTCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCTTATCCGGTTCAAAATGGATCTGTATCTTCAAATAAAGTAACTAGGGACTTAACAGCGCAACATAGCCAAGAAAAGGATATTGGGAAATCGCAATCTGTTGCAGCCTCAGGAGCTGCAGATTCAAATATGCCTGTTTTTTCTAGTGCTGAGTTCATGGATCGGGATCTCGAAGCGACACTGTCAGAGTATATGTCCTCTGTTTCAAATGTTCCTTTATTTGTTAAAGAGGCCGATGCTGAAGCACCTCCCTTGCAGACCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCAATGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATTACTTGTTGGCTTTGAAGCTTCTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATATATGTCTTTTAATGACAAGTTGACGCACATAGTTATTGGGAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTGGGTGTCATTTATGTCGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTCGGAGACACATAGCACATGATCTACTTCTTCCAAAAGCTAGCTTAGTAAAGGGAGCAGTAACAGGCATTATGTCCGTGGATCAAGGTAAAAGCTCTGGCTTTCATCAAAGCTTGCAGTCTGATCAGGTGGTGGGTATTAAGGACTTTGGAGTTGTAATGCCAGAATCTTTGGAGAGAACCATACAAGAGAAACCAGATATGGGTACAAATGTTTTCACATTCAGTAAAGCAATGGGCAGAACTATGCTGCAAAATCAACTTCCTGATAATAAATTGAGGGTACAAAAGATGACACAACATGACTCCAATGTTCAACACTTGAAGCCAACAAATGTTTTCAGAGGGAAAACATTTTGTTTTTCAAATTCATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATGATAATAAGTAGGCAAACAAAACAGAGTGTCCACTACACTATTGAGTGTCATGGTGTAACACCCAGGTTGACAGGTGATTGCAAAAGTACGAATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCCTTGCTGGATGTTGACAGTCATATTCTTTATTCTCCACTTCCCTGCCGTGTCCCCTTGCCTGGGTTTGAAAGCTTCCGATTTTGTGTTTCACAATATGAAGAGAAAGACAGAATTCTACTGAGGAACTTGTGCTTTGTACTAGGAGCTAAATTTTTGGAAAAGTTGACTAAGAAGGCCACCCATTTGTTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATCCGATCAGTCACATCTGAATGGATATTTGAATGTGTCAAACAGAATGGGGTTGTTGCCATTGATCAATATTTACCCAAAGCAGTCACTGCTCAAGAACAAGAGGCAGGAATTTGCACCGTGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACGTGCCCTCCCAGTTTCCTAGTCAATCACAAAATTTGAGATACACGGCAAATAAAAATGTAAGTGATGGAGTCGAGAATCATGGGACTGATTCTAAAATATCTAGTATCAATAGCAAAAAGGCAAGGCTTGTGGAAGAACCTGGTCTGTCTGATAAGGTGCCTTCTGCAGTAAATTCAGGTATTCATGTCTATGACATGAACTTTTCTGAAAACAATACGCTTAAAGATTCTGCGGAAGCTTCTAATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGTAAGATTCATGATCAGAGGTCCCCAGGGAGTACAGGGTGTGAGAGAAGAATTTACTCATCTGATTGTTCAGTCCTTGGTGAAGACAATTCAAATCCTCATACTGTCTTTGGATTATCTAAACACTGGTTAAACAGAAAAGATGATAATGGTGGGGCTTCTGAAGACAGAAGAGCAGGAATGTATGATGGTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTTATAGATAGAGTCCGAATTCGAACATATGATAAAAATAAACTCAACCTTGGTCAGCTAATGGAGGAAACATATGCAGCAGTGAAAGGGGCAGAAGAAAAAGGGACTATCATGTGCTAA 3015 0.4136 MLKTKAFNGANVFMSRNLVPPEVFDALHDAVKVNGAHIHLCCDPSRNGPNDYHIISCSKHEKFEDLKSKGCKLLGPRCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDADEKVKIEELVTEMGGVLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTHEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADKRKEMEKLILQNGGKYSAELTKKCSHLISDTPEGDKYKVAKRWGHIHIVTTKWFVQSIARRACLNEESYPVQNGSVSSNKVTRDLTAQHSQEKDIGKSQSVAASGAADSNMPVFSSAEFMDRDLEATLSEYMSSVSNVPLFVKEADAEAPPLQTSNELNFDGAVANDSESDDNDLYLSECRILLVGFEASEMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKTSWLEDCDREKKEVPVLRRHIAHDLLLPKASLVKGAVTGIMSVDQGKSSGFHQSLQSDQVVGIKDFGVVMPESLERTIQEKPDMGTNVFTFSKAMGRTMLQNQLPDNKLRVQKMTQHDSNVQHLKPTNVFRGKTFCFSNSFPEERRAEIVQWISQGGGEMIISRQTKQSVHYTIECHGVTPRLTGDCKSTNISSHWIRSCLEDGSLLDVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFLEKLTKKATHLLCKFTNGPKYEAACKWGIRSVTSEWIFECVKQNGVVAIDQYLPKAVTAQEQEAGICTVSQFPTQAAQMISDVPSQFPSQSQNLRYTANKNVSDGVENHGTDSKISSINSKKARLVEEPGLSDKVPSAVNSGIHVYDMNFSENNTLKDSAEASNAVPDVAAAIEDLLEQTSKIHDQRSPGSTGCERRIYSSDCSVLGEDNSNPHTVFGLSKHWLNRKDDNGGASEDRRAGMYDGFSETQTESQVVGYEEDLSGRQMLIDRVRIRTYDKNKLNLGQLMEETYAAVKGAEEKGTIMC* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02513 1004 SMART BRCT_7 184 261 IPR001357 -
Rops9g02513 1004 SMART BRCT_7 667 743 IPR001357 -
Rops9g02513 1004 SMART BRCT_7 570 647 IPR001357 -
Rops9g02513 1004 SMART BRCT_7 97 174 IPR001357 -
Rops9g02513 1004 SMART BRCT_7 374 454 IPR001357 -
Rops9g02513 1004 Pfam BRCT domain, a BRCA1 C-terminus domain 570 654 IPR001357 -
Rops9g02513 1004 ProSiteProfiles BRCT domain profile. 568 657 IPR001357 -
Rops9g02513 1004 SUPERFAMILY BRCT domain 186 272 IPR036420 -
Rops9g02513 1004 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Rops9g02513 1004 SUPERFAMILY BRCT domain 635 753 IPR036420 -
Rops9g02513 1004 ProSiteProfiles BRCT domain profile. 670 753 IPR001357 -
Rops9g02513 1004 CDD BRCT 103 170 - -
Rops9g02513 1004 Gene3D BRCT domain 566 663 IPR036420 -
Rops9g02513 1004 Gene3D BRCT domain 37 94 IPR036420 -
Rops9g02513 1004 FunFam Transcription coactivator 354 464 - -
Rops9g02513 1004 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Rops9g02513 1004 SUPERFAMILY BRCT domain 570 659 IPR036420 -
Rops9g02513 1004 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Rops9g02513 1004 FunFam Transcription coactivator 97 185 - -
Rops9g02513 1004 Gene3D BRCT domain 665 759 IPR036420 -
Rops9g02513 1004 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Rops9g02513 1004 FunFam Transcription coactivator 565 663 - -
Rops9g02513 1004 Gene3D BRCT domain 186 272 IPR036420 -
Rops9g02513 1004 Pfam twin BRCT domain 674 735 IPR001357 -
Rops9g02513 1004 Pfam twin BRCT domain 104 166 IPR001357 -
Rops9g02513 1004 Pfam twin BRCT domain 190 253 IPR001357 -
Rops9g02513 1004 SUPERFAMILY BRCT domain 372 458 IPR036420 -
Rops9g02513 1004 CDD BRCT_TopBP1_rpt2_like 668 743 - -
Rops9g02513 1004 Gene3D BRCT domain 97 185 IPR036420 -
Rops9g02513 1004 Gene3D BRCT domain 361 461 IPR036420 -
Rops9g02513 1004 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 974 - -
Rops9g02513 1004 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Rops9g02513 1004 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02513 1 974 Core DNA Replication Machinery Family AT1G77320 49.707 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02513 K10728 - gmx:100804966 1523.45