Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02502 ATGGATCAACACCACTCTCACTTCCTCCACCACCACCACCACAATCACCACCACCAACAGAATCGTTCAAGATACGCTCCTCTCCCTTCTCAATCTCACAACCACCACCTCCCTCCGCCGCCACCGCCGCCTCCTCTCTCCTACCGCACCATCCACACCCCTCCTCCTCCTCCTCCTCCTCCCCCACCCTACAACAACCCTCCTCCTCCTCCACCACCACACCAATCTCAACAACCACAATTCCCTTTTTACCCTCACCGCCCTATAGAAGAAGAACAACGCCCTATCTCAACCAACCCTCATATCCACCACCGCCACCACCATCCCTTCTCCTCCTCCAATCGCATGCTCCCCGACGATCTCCTCCCTCCTTGGAACCCTAGCCCCGACGATCGCCCTCGCCGCAATTACCCTCCCCTCGAATTCGACCGTGAATTACACCACCACCATCACCACAACCACCGTCCTCCTCCGCCACCACCATCTTATCTACCGATCGAAAACCCCCTCCGTTACGACCCCGAGGGAATCACTCCAAGGTTAAGGTCTGATCGCATCGATGGAAACCCCAGGGAAGGCATCGTCTGGGGCAGAAGTAATAACATCGACGGCAATTACCACCACCGCCGCAGCGTCCTCAACTCACCCACCGCAGCGCCGATGCCGAGTCAGGCCCCGATCTCAAGAGACATCGACGCCGATTCAAATTCCGGCGGTTATGTTCGTGTCTATGGCGTGGAACACGATGCTGACGTGTCCACAAGGGTTGGCAGAGTAGTTGAAAACAGAAGGTGGATGAACGATCGAAAAGGACCACCAACAAGAGAGTTACATGACTCTTCTCCTCCTCCTTTTGAATTGGTGAGTGACGAAACCGGTAAACGAGATTATTACGGTTCTGAAATGGTTAGGTATAATAGTAACAATAATTGCAGAGGTAGTAACAGCAGAGAGTGTGGTCATGAATTCACTCGCACTCCTCCGAAGAAACAGATACAGAAGAAGAGTGCACTTCTTAGAATCCAGACGGTAAAACCAAGTTATAGGAACCGTGACGTTGAACAGTTACGTTATGCTACTTATGCTCCTGAATCTAACTCTAATTTCTTCAGGGGTAAAGAACAACATCATCATCATGGGTATTTAGGTCATGAGAGAGAAGGAAGCCCTGTTGAGCTTGATATTTCTTTTGAATCTAACTCTCTTGTGGCTAAGGCTATTGTGGCACCTTCAAGTTCTGGTGCTCCTGTTTCTTATTCCAATAATATGATTCCAGTTTCTGATGCAGATTTGACTCAAAAGGTTTCAGTTTCGGAACCATCTACTGGTGTTTTGAGTTTAAATAGATCGCCTTGTAAAGCAAATGATGATGCCTTTAGTTCTGGCAAGGATTTGAACCTGCAGAAGAATGTCTCTGATAATTCTTCTCAGCCTTGTGCTGGTGTGATTGGTAATCCTAATGGGAAAAATGAGGTGGCGGTTTCAGTTGAAGGTACTGATATTTGTTCTGGTAAATCGTTGTCCCCTAGGGTTGCCAAGAAGAAAAAACTTGTTAAAAGAGTGGTGAAGAAAGCTGTTGTAAACCCTAATTCAGCTGTGTCTAATTCACCATCCACAAATGCACTTCGTGGAACTGTGCAAGCAGATAATGTAGCTCGCAGTTCATCAACTGCATCTGCTCTTGACAAAACTGAAACTTGTGTGGAGGAGGAAAGCACCACCACTGTTGACAAGGTGTCTGTGCCAGAAGGGAATGTATTGACTGAAGATAAAAAGGGGGATCTATCCCTGCAGAGTTTGGGGCCAGATTGCAGGTCACAAGAATGTAAGACTGATGAAGATTCTGATATTGGGAAAGTATCCAGGTTTGAAAGAGGTGGAAGCATTTCAAAATCTCCATCTTGTGCTTCTAGTAGTGAAGATAAAAAGAGTGGTTCTGATTGTTTAGATACAAACAATTCTGTTCATGACTTGCTTAGCATGCCAAATACTGAGGTTACTAATTCATTAAATGGAAGTACTTCTTCTGAAATCAATTACATGGATTATGATAATAAGCAATTATGTCAGAATGAAGTGTCTCTATCACCTGGGAGATATTCAAATGTAGGATTCCCACAGAATAGGAATCTTGTAGATGTAGGGGATGAAATAAATGACAAATTGTTTAGTTCAGCCGACAGTGTCATTGCCACAGATCTTATAGATAAATGTAATTCTGCCAATGACAGGGTTTATAGCTTCAATTCCAATGATCTTACAGGTTCAGAAGAGAAACATGCTGTTACTAACAGTGGGAATAATGGCACTTTGAGTAAGGCATATTGTGGAAATATGGCTCCTACAATCGCTAAATATGCTATTTTGGAAGAATATTCAGATAGAGCCATCCCTCTGCAAAGCAGTGGAATGGTTACTTTTTCAGATTCAGGAAATACTAGGATTCAGGACGGGCTTGATTGCCTACAACATGCCAGTGTACTGAAGCAGGGTTCTGATAATGGATCATCTAATTTAGAAGATAGTATCACTGTTCACCATTCTGGTATAATGAAAGATGCTGGAAAGCAGGTATCCCCTGATGATGTCACCATATCCCCTGAGAATTGTGACACAGAAAAAACATTACCAAATTCTAATATTTCAGTTGGATCTGATGAAGGGGATATGAATAAGATAAAAAAGAGAAAAGTTTTGACTCATTTAAAATTTGTGAGTTTGAAAGAGGGTATATCTCCAGACCATGTTAATCCAGTTAGCCAAGCAAATGATGTGTATCGAGGCTCTAATCTGTTGTTGAAGGATCCATGTCCTTTAGAAGTTTTAGATCAACCTCTTCAAAGGTTAGATTTTAGCTTACAATCCAGCTTGGATGGGGTCACTGCTTTACATGGAAAAAGGGGGGTTTCGGAGGCTGAGTTTTATGTTGGAAATAATGATAAAGATGGTACAAATAAAGTTTCACCAGTTTCTAAAGGGACAAAAGTCACTGCTAGTCATGCAAATTCTCCTCAATCTCTATCTGAATTCGGTGATGCGATTGTGGCTACCACATCTAATGCAGAAGTTCCCATCAGTTTTAGTGATAACCAAGCATATCAGAAAGAAGTTGCATTGTCAAGCATGGGTATTCTGTCTACTGCTCAGATGATGCCTTATTCAGAGGATATTGCTAAAGTGTCAGACAGTGTTTTGGATGGAGGATCTTTTGAGTCTATGGATGTAGATAGGGAAACCATGAGTTCTGAGCATTTGGAATTGCAGCATTCAGATATTGTCTCTCATTCACCATGTGAGGACTTGGCCTTTCCAAATGTTCAGTTCTCAGTGTTGGAATGTGAGCAGAAAGAAAATTTTACTCCAATTGTACCTATAAATAATACTCAAATTGACATTTCGGTTATTGGAAACAAGGGAGAAAAGACTGATTTACAAGCCGCTGAAGAAACTTACCAGTATAGAGACCTTGTGCAAAGGTCTCCAAGGGCTGATATGGAATTTATTGATCTGAATATGAAGGATGATCTACTTGCTCAGCAGAACCTAATATCCTCCCCAGCCGATGGTGATGTAATCATTACCAGTAATTCTAATGATGAATTGATTGAGGATTCACCTGATGTTTTATCAGATATGTGTTCTCAAGGGATGACATCTGAAGTAACAGATAGAAGGATTTTAGAATTTACAGCAATCCACGATGAAAACATTTGTGGGGGTGAAGAAAATCTAAATAAGGTGTCTGTGGTTGAACATGGTTCTGACTTGCATATTTCATCAATACAGCATACTAAAAAGATTATGATGTCAGATCATGCAATTGGACGTAGTGACCCAATAATGACGAATATAATGTCAGAACCATCCCAAGTTTATTCCGAAGTTACAAATCAGGGTCTAAATTCATATTGTTCAGAATTAAATGGGAGCAAAAATCAGCCAGGTGGTGTCATTCATAAAACTTTCCAGGGTCATTCTTTCACCTTTTCAAAGCCAAAGACAAAGACATCTGCCTCTTCAATCCATCTTTCAAAACATCGAACTTGGCATCGCACAGATAATAATCCTCCCACTTCTTTACCAAGAATTAAGCCTTTGGCAGGAACAGTTCCTCCCAAAAGGCCGGTTCTAGAAAGGAAAAGGAACTTTCAAAATACCTCTTACATTCGTAAAGGTAACAGTCTTGTAAGGAAACCTACTCCAGTTTCTGCTTTACCTCAAATCTCCTCTGCTAGCCAGTTACCTTTGGGTTTAGATGAAATACAAAAGAGCACCATATCTGAAAGCAGGGCTGATCTGACTGATGAACCAAGCTACTTGAAAACAGGAGAAACAAATGCTCCTCAGCAGAGGCAGAAAACACCTCCACTATCCATTGACACCAAATCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTTCAGTGGTTGCTGTGAAAATGTATCAGATCCTGGGAAATTTATAGAAACTAATGATGCACCAAACTCTTCTGAAGATGCACTGAAGCATTATGAAACTCCTGAAAATCAAATGGGTCTGTCTAACAATGGAGAGAACCAAGCTGAAGCAAATGATGGAAATATTTCTTCTTTGAACACAAAGAGAATAGTATATATAAAGCCCAAAACAAATCAATTGGTTGCAACTTCAAATTCTTGTGATGCTATTGTCTCTGCTGATGATAAGGGCCAAACAGCCTTCTCTGATGGCTACTACAAGAGGAGGAAAAATCAATTGGTTAGGACTACATTTGAAAGTCATATCAACCAGACAGCTGCAATGCCTGATAGCACTGTAAATTCTGACAGTCAAGGGGTTAGTAAGGTTCTTTGCAACAAGAGGTTTACTAAGAGGCGATCACATAAGGTTACTGGGAGTTCATGCAAACCTTCAAGAGCCTCATTAGTGTGGACACTTCGTAGCAAAATTTCATCCGATAATGACAGGGTCTCATGGCATTATCAAAAGGTTTTACCTCAGTTGTTTCCTTGGAAAAGAGCAACATATTTAAGAAGCTTCATTCATAATTCTGCTTCCAGCGTCAATAGTAGTTCCTTACCTGCAGTCAGCAAGAAATTGCTTCTGTTGAGAAAGAGGGATACTGTCTACACTAGGTCGACCCGTGGGTTTTCTCTTTGGAAATCCAAGGTATTAGGTGTTGGTGGCTCTAGTTTAAAATGGTCTAAATCCATTGAGAAGCACTCAAAGCAAGTTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAGCAGAAAGATGCAGCTTGCATTGGTTCTCAGGCTAAGAGAGAACGTATATTTCGTATTGGTTCAGTACGCTACAGAATGGATCCTTCCAGGCGGACACTACAGAGGATTTCAGATGATGAATCCATGTCCTCTGCCTCAAGCTGTTCAGGTTTGGCTGCCAAAAGAGCTTACATTCCAAGAAGATTAGTGATTGGAAATGATGAATATGTCCGAGTTGGCAATGGTAACCAGCTTATCATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCGAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGCCCTTATATTCATGATCCCTCAAAAATCGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCACAAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGAAATTGCCCATATAGACATGTCAACGTGAACCCTAAGGCGTCTGTTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTCAAGGAACCAAATGCAAGCTTCATCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCACAACTACAGTAGAGGGCGTTACTTTGGTTCTATCCCGGTTGAAGTTTCTGAACCAGGTATGGTGGTGGCCCCAAGGCAACGAGAACAGAATGATGACCTTGAAAAAGAACTTTCCGACTACATCGATCTTGATGTGGATGAAGAAGTTGGAGACACTATTGATCAATCCTTTGAGCAATCAACATTTTGTGACAATGATTCCTTGGATTTACAGTTGGATACTTTTGATGAACTTGTTAAACCGATTCTTATAATGAAACAATTCTCATCGCAATTGTCTCGGTCCTGGTAG 6318 0.4194 MDQHHSHFLHHHHHNHHHQQNRSRYAPLPSQSHNHHLPPPPPPPPLSYRTIHTPPPPPPPPPPYNNPPPPPPPHQSQQPQFPFYPHRPIEEEQRPISTNPHIHHRHHHPFSSSNRMLPDDLLPPWNPSPDDRPRRNYPPLEFDRELHHHHHHNHRPPPPPPSYLPIENPLRYDPEGITPRLRSDRIDGNPREGIVWGRSNNIDGNYHHRRSVLNSPTAAPMPSQAPISRDIDADSNSGGYVRVYGVEHDADVSTRVGRVVENRRWMNDRKGPPTRELHDSSPPPFELVSDETGKRDYYGSEMVRYNSNNNCRGSNSRECGHEFTRTPPKKQIQKKSALLRIQTVKPSYRNRDVEQLRYATYAPESNSNFFRGKEQHHHHGYLGHEREGSPVELDISFESNSLVAKAIVAPSSSGAPVSYSNNMIPVSDADLTQKVSVSEPSTGVLSLNRSPCKANDDAFSSGKDLNLQKNVSDNSSQPCAGVIGNPNGKNEVAVSVEGTDICSGKSLSPRVAKKKKLVKRVVKKAVVNPNSAVSNSPSTNALRGTVQADNVARSSSTASALDKTETCVEEESTTTVDKVSVPEGNVLTEDKKGDLSLQSLGPDCRSQECKTDEDSDIGKVSRFERGGSISKSPSCASSSEDKKSGSDCLDTNNSVHDLLSMPNTEVTNSLNGSTSSEINYMDYDNKQLCQNEVSLSPGRYSNVGFPQNRNLVDVGDEINDKLFSSADSVIATDLIDKCNSANDRVYSFNSNDLTGSEEKHAVTNSGNNGTLSKAYCGNMAPTIAKYAILEEYSDRAIPLQSSGMVTFSDSGNTRIQDGLDCLQHASVLKQGSDNGSSNLEDSITVHHSGIMKDAGKQVSPDDVTISPENCDTEKTLPNSNISVGSDEGDMNKIKKRKVLTHLKFVSLKEGISPDHVNPVSQANDVYRGSNLLLKDPCPLEVLDQPLQRLDFSLQSSLDGVTALHGKRGVSEAEFYVGNNDKDGTNKVSPVSKGTKVTASHANSPQSLSEFGDAIVATTSNAEVPISFSDNQAYQKEVALSSMGILSTAQMMPYSEDIAKVSDSVLDGGSFESMDVDRETMSSEHLELQHSDIVSHSPCEDLAFPNVQFSVLECEQKENFTPIVPINNTQIDISVIGNKGEKTDLQAAEETYQYRDLVQRSPRADMEFIDLNMKDDLLAQQNLISSPADGDVIITSNSNDELIEDSPDVLSDMCSQGMTSEVTDRRILEFTAIHDENICGGEENLNKVSVVEHGSDLHISSIQHTKKIMMSDHAIGRSDPIMTNIMSEPSQVYSEVTNQGLNSYCSELNGSKNQPGGVIHKTFQGHSFTFSKPKTKTSASSIHLSKHRTWHRTDNNPPTSLPRIKPLAGTVPPKRPVLERKRNFQNTSYIRKGNSLVRKPTPVSALPQISSASQLPLGLDEIQKSTISESRADLTDEPSYLKTGETNAPQQRQKTPPLSIDTKSEENISSPLVEPPFSGCCENVSDPGKFIETNDAPNSSEDALKHYETPENQMGLSNNGENQAEANDGNISSLNTKRIVYIKPKTNQLVATSNSCDAIVSADDKGQTAFSDGYYKRRKNQLVRTTFESHINQTAAMPDSTVNSDSQGVSKVLCNKRFTKRRSHKVTGSSCKPSRASLVWTLRSKISSDNDRVSWHYQKVLPQLFPWKRATYLRSFIHNSASSVNSSSLPAVSKKLLLLRKRDTVYTRSTRGFSLWKSKVLGVGGSSLKWSKSIEKHSKQVNEEATLAVAAVERKKREQKDAACIGSQAKRERIFRIGSVRYRMDPSRRTLQRISDDESMSSASSCSGLAAKRAYIPRRLVIGNDEYVRVGNGNQLIIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYVCPTFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDHNYSRGRYFGSIPVEVSEPGMVVAPRQREQNDDLEKELSDYIDLDVDEEVGDTIDQSFEQSTFCDNDSLDLQLDTFDELVKPILIMKQFSSQLSRSW* 2106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02502 2105 MobiDBLite consensus disorder prediction 1 84 - -
Rops9g02502 2105 FunFam Zinc finger CCCH domain-containing protein 7 1947 2008 - -
Rops9g02502 2105 Gene3D - 1947 2009 - -
Rops9g02502 2105 PANTHER CCCH ZINGC FINGER 320 2095 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 99 187 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 1989 2009 - -
Rops9g02502 2105 Gene3D - 1891 1946 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 464 483 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 266 291 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 1439 1470 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 1331 1373 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 549 649 - -
Rops9g02502 2105 Coils Coil 1741 1761 - -
Rops9g02502 2105 ProSiteProfiles Zinc finger C3H1-type profile. 1864 1893 IPR000571 GO:0046872
Rops9g02502 2105 MobiDBLite consensus disorder prediction 867 888 - -
Rops9g02502 2105 SMART c3hfinal6 1946 1972 IPR000571 GO:0046872
Rops9g02502 2105 SMART c3hfinal6 1864 1892 IPR000571 GO:0046872
Rops9g02502 2105 SMART c3hfinal6 1919 1944 IPR000571 GO:0046872
Rops9g02502 2105 SMART c3hfinal6 1893 1917 IPR000571 GO:0046872
Rops9g02502 2105 SMART c3hfinal6 1973 1995 IPR000571 GO:0046872
Rops9g02502 2105 ProSiteProfiles Zinc finger C3H1-type profile. 1946 1973 IPR000571 GO:0046872
Rops9g02502 2105 MobiDBLite consensus disorder prediction 606 621 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 33 79 - -
Rops9g02502 2105 ProSiteProfiles Zinc finger C3H1-type profile. 1919 1945 IPR000571 GO:0046872
Rops9g02502 2105 MobiDBLite consensus disorder prediction 1986 2014 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 1425 1475 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 7 21 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 464 487 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 627 649 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 214 234 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 867 886 - -
Rops9g02502 2105 MobiDBLite consensus disorder prediction 549 563 - -
Rops9g02502 2105 FunFam zinc finger CCCH domain-containing protein 3 1894 1945 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02502 1870 1999 C2H2 Transcription Factor Family AT2G32930 32.353 7.42e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops9g02502 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02502 - - lja:Lj1g3v0268620.1 2453.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02502 9 46837255 46850747 Rops9g02502 9 46837255 46850747 ECH