Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02492 ATGGAAACTGAGGAGGGAACTAGCAATGCTGATAATGCTGAACATGCCGAACCGGATCGGTGTTTGAATTCTGGAGTTGTAAATAATGGGGTGACAATTGATGGTGGGAATGATGTTGCTGAAGGTGGGGAAGTTTGGGGTTTGAAGAATGAAGTTGTAAATAATGGGGTGGCAATTGAAGGTGGGAAAGATGATGCTGAAGGTGGAGAAGTTCGGGGCTTGAAGAATGAAGATGTGAATAATGGGTTGGCAATGACTGATGGGAATGGCTTTGCTGAAGGTGGAGAAGGTTGGGGATCGAAGAATGAAGATGTGAATAATGGGTTGGTAATTACTGATGGGAATGGTGTTGCTGAAGGTGGAGAAGTTCAGGGATCAAAGAATGAAGATGTGAATAACGGGTTGGTAATTACTGATGGGAATGGTGTTGCTGAAGGTGGAGAAGTTCGGGGATCAAAGAATGAAGATGTGAATAATGGGTTGGCAATTACTGATGGGAATGGTGTTGCTGAAGGTGGAGAAGGTTGGGGATCGAAGAATGAAGCTGTAAATAATGGGGTGGTAATTGCTGATGATGGGAATGGTGTAGCTAAAGGCGAAGGGTTTAGGTGCTTGAAGAAGAGAACTGTAGATAATGGAGTGGCCATTGTAGATGGATTTGGTGTTGCTGAAGGATATGCTGGTGGAGTTGAATGTTTTCGAACTTATAAGAGGCGCAAGCATGTAAAGTCAAGTTCAGAAAGTAAAATTCAGGAAGGCAGCAGAGAACGTGTGGAAGCTGCTAGTCACTTGTCAGACCAGGCTGTGAAGAAACCATGTGATTTAGCTGTAGGCAATACTTCAAAAGATTATTCACATGGGCATTGGGGAAATGTTGTACTAAAGCATCTATATCATTCATTAGGCAATGAAAATGGTGGCATGGAAAGGTGTATGTGGGAAGCACTCGTGAATTGTCCTAAAATTAGTTGTGCCACAACAGTTACGGAAACTCTTAAAATTGACAAAGATGGTCAAGAATGCTCTTCAGAATTTGAGTGGTTGTCTCGTAGATTACAAAGTGAAGCTAATGGGCATACAAATGTCATGAGCAATGGATTCTCTACTGAATCAGATGGTCATGGTGCGACTGAGAGGTGTCAGCGTGTATTCTGTAATATCTTAGCCTCTGAAAAGTTCAGTTTGTTATGTAAAGTGCTACTCGAAAGTTTCAAAGGAATGAAACCTGAAAGTGTGTTTGACTTTAGTGTCATAAATTCAAGGATGAAAGAACAAGCTTATGAACAATCGCCTACACTTTTCTTATCAGATATTCAACAGGTTTGGAGGAAGCTTCAAGACACTGGAAATGAGATTGTTGCTATTGCTAAGAGCCTCTCCAACATGTCAAAAGCTTCCTACCATGAGCAGTTCTCTAACCAGGAATTCAACTCTCCCATGAAACCAGAGCAGACAGAAGAATGTGCTACATATAAAATTTGCACTTGCAGGCTTTGTGGTGACAAAGCAGATGGGACAGATTGTTTGGTTTGTGATTCATGTGAGAAGATGTACCATGTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCTACAAAAACTGGTTCTGTGCCAGTTGTACTGCTAGTGGAATTGGATCTCGACATGAGAATTGTGTGGTGTGTGAAAGGCTGAGTGTCCCGAAGACCATGAACATTATTGTTGGTGAGGAAAGCATCCCTACAAATGAGGAAACATTAAATGAATTGGAAGAGAATTCAAATTGTACTCATGATGAGATTCAAGTTTCTATAGGTGGAGGAAACTCGGCTTCCTGCAAAATTTGTGGTAAGGAGGTGGATGGTGAAAAAATAAAAATCTGTGGTCATCCTTTTTGCCCCAGTAAATACTACCATCTAAGGTGTTTGTCAAGTAAGCAGACCAAGTTATATGGGCACTGTTGGTACTGCCCTTCTTGTTTATGTCAAGTTTGCTTCACTGATCAAGATGATGATAAGATTGTTCTCTGTGATGGTTGCGATGATGCATATCATGTCTATTGCATGAAACCTCCCCAAACTTCTATTCCTAGAGGGAAATGGTTCTGCAGAAATTGTGATTCTGGGATCCAAGCAATACATCAGGCAAAAAAAGCATATGAAAGTAGCAAGCGGAGAGCTGGTGAAAATGTTTCAAATCTAAATGATGATATTGATAGGACTATAGAGAACAAAGAGCAAAAAGCATCCAAAGAAACTTTGATAATTGCAGTCTGCGAGATTAAGCAGATGGTCGGAGATCATTTGCTTTTCAGCTACTTTACCTCTATCCCAGCAGACCCTTCGCTCCGGTAG 2334 0.413 METEEGTSNADNAEHAEPDRCLNSGVVNNGVTIDGGNDVAEGGEVWGLKNEVVNNGVAIEGGKDDAEGGEVRGLKNEDVNNGLAMTDGNGFAEGGEGWGSKNEDVNNGLVITDGNGVAEGGEVQGSKNEDVNNGLVITDGNGVAEGGEVRGSKNEDVNNGLAITDGNGVAEGGEGWGSKNEAVNNGVVIADDGNGVAKGEGFRCLKKRTVDNGVAIVDGFGVAEGYAGGVECFRTYKRRKHVKSSSESKIQEGSRERVEAASHLSDQAVKKPCDLAVGNTSKDYSHGHWGNVVLKHLYHSLGNENGGMERCMWEALVNCPKISCATTVTETLKIDKDGQECSSEFEWLSRRLQSEANGHTNVMSNGFSTESDGHGATERCQRVFCNILASEKFSLLCKVLLESFKGMKPESVFDFSVINSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGNEIVAIAKSLSNMSKASYHEQFSNQEFNSPMKPEQTEECATYKICTCRLCGDKADGTDCLVCDSCEKMYHVSCIEPAVKEIPYKNWFCASCTASGIGSRHENCVVCERLSVPKTMNIIVGEESIPTNEETLNELEENSNCTHDEIQVSIGGGNSASCKICGKEVDGEKIKICGHPFCPSKYYHLRCLSSKQTKLYGHCWYCPSCLCQVCFTDQDDDKIVLCDGCDDAYHVYCMKPPQTSIPRGKWFCRNCDSGIQAIHQAKKAYESSKRRAGENVSNLNDDIDRTIENKEQKASKETLIIAVCEIKQMVGDHLLFSYFTSIPADPSLR* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02492 777 MobiDBLite consensus disorder prediction 245 263 - -
Rops9g02492 777 SUPERFAMILY FYVE/PHD zinc finger 464 541 IPR011011 -
Rops9g02492 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 701 IPR013083 -
Rops9g02492 777 Coils Coil 717 737 - -
Rops9g02492 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 654 IPR013083 -
Rops9g02492 777 MobiDBLite consensus disorder prediction 140 177 - -
Rops9g02492 777 Pfam PHD-finger 496 542 IPR019787 -
Rops9g02492 777 Pfam PHD-finger 655 701 IPR019787 -
Rops9g02492 777 MobiDBLite consensus disorder prediction 243 263 - -
Rops9g02492 777 MobiDBLite consensus disorder prediction 1 24 - -
Rops9g02492 777 SUPERFAMILY FYVE/PHD zinc finger 600 654 IPR011011 -
Rops9g02492 777 Gene3D - 403 543 - -
Rops9g02492 777 ProSiteProfiles Zinc finger PHD-type profile. 652 702 IPR019787 -
Rops9g02492 777 PANTHER OS02G0192300 PROTEIN 425 542 - -
Rops9g02492 777 SUPERFAMILY FYVE/PHD zinc finger 654 703 IPR011011 -
Rops9g02492 777 SMART PHD_3 495 541 IPR001965 -
Rops9g02492 777 SMART PHD_3 605 654 IPR001965 -
Rops9g02492 777 SMART PHD_3 657 700 IPR001965 -
Rops9g02492 777 ProSiteProfiles Zinc finger PHD-type profile. 493 543 IPR019787 -
Rops9g02492 777 FunFam PHD finger protein EHD3 isoform A 398 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02492 Rops-Chr9 46612908 46626877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02492 630 721 C2H2 Transcription Factor Family AT3G01460 35.922 7.09e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops9g02492 PHD 4.6e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02492 - - gmx:100786712 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02492 9 46612908 46626877 Rops9g02492 9 46612908 46626877 ECH
Rops9g02492 9 46612908 46626877 Rops10g01966 10 35866032 35873669 PCT