Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02483 ATGGAACCAAAGGCAAATCACACGCAACTGTTAATGGTAGCATTAGCCATGGTAGTTGCAGTTGCAGTTGCACAAAACCAAACCCTGGCTGGCTGCAATTCCACTTGTGGAAATGTCGAAATTCCATATCCATTCGGCATAGGAAATTCATCTATGTCACCTCAACGACCCTGTTACATGGGTCCCGAATTTAAACTCACCTGTAACGATTCCAAATTAACTTGGGCTGGAGCAAACGTTTCACACATACGCATTCAACAAGGTCAAATGGACGTGTCGTTTTTCGTCTCAAAGCTTTGTAAAGATCCTGATGGAGAGGCCAATGACCCTCTTCTCCGAAGTCGGTATTTCACTATTTCCAGCAGTGAAAACAAGTTTATAACTGTTGGCTGCGACACTTACGGGTATCTAAACAGTTTTTACAATGGGTCCACTTATTCTACTGGGTGCTTGACAAGATGTTATGGAAGCAACCCTGATATGCAAATTGAAAAAAGCGATGGGAATTGCACGGGTATAGGGTGTTGTCAAGTGGATATTCCACCTGGGATGAAGAATATCACTCTACAAGTTTACAAGTTCCCCAATTCCACTAGATCTGTTGAAAACTGCAGTTATTCCTTTATTGCAAAACGAGGTTCCTATCATTTTTCTGCCAAACATTTAGAATATCTACCCAACGAAACTTTCCCATTGGTTGTTAATTGGGCTGTTAGAAATGGATCATGTCAAACTGCCAATGCCTGCAAGGCAAATAGCGAGTGTGACGACAAGGACACAGATTACGGCTACCGATGCAAATGTCTTGACGGTTACGAAGGAAACCCTTACCATCCGGATGGTTGTAGAGACATTAACGAATGTACGACACCAAATCATAAATGCATAAGTAAAGAGAATTGTATGAACAACATTGGGAATTACACATGCTTCTGTCCTAAGGGGCATTCCGGAGATGGAACAAAGGAAGGAGGGTGTCGCAGACGTGATGTAATTACCAAAGTCATCATTGGAGTAGGAGCAGGAGTTATTTTGCTATTTGTGGGGACTTCCTCACTGTACTTAATGTACCAGAAAAGGAAACTCATCAAACTCAAAGAGAAATTCTTTCAGCAGAATGGTGGTGTCATTTTGCTACAGCAACTCTCCACAAGAGAAGACTCCTCCCAAACTGCTCAAATTTTCACAGAAGATCAACTAAAGAAGGCCACCAACAACTATGACGAGGGCTTGATTATTGGCAGAGGAGGTTTTGGTACAGTTTTCAAAGGATTCCTAGCAGATAACAGAATTGTTGCTGTCAAGAAATCCAAAATAATTGATGCGAGCCAAATCGAGCAATTCATTAACGAGGTGGTTGTTCTATCCCAAATCAATCACAGGAATGTGGTCAAACTCTTGGGATGCTGTTTGGAGACAGAAGTTCCTTTACTGGTTTATGAATTTGTTAGCAATGGTACCCTTTTTAATTTTATACACACTGAAGGCAAGGTGAATAATGTAACATGGAAAGCACGTCTAAGGATAGCAGCAGAGGCAGCTGGAGCTCTATCATATTTGCATTCAGCTGCCTCCATACCCATCATCCATAGAGATGTCAAGAGTACTAACATTCTCTTGGATGACACTTACACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCGCTTGATCAAACTGACATAGCCACAATGGTGCAAGGGACTATTGGATACTTAGACCCAGAGTACATGCAAACAAGCCAACTCACTGATAAAAGTGATGTTTATAGCTTCGGGGTAGTGCTTGCAGAGCTGCTAACAGGGGAGAAACCTATTTCTTTTGACAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCACTTGCTGTCTTGCTTGAAAGAGGATTGCTTGTTTGAAATTCTTCAAGTTGGTATCTTGAATGAAGAAAATAAGCAGGAGATCCAGGAGGTTGCTATTCTTGCAGCAAAGTGCTTGAGACTTGTTGGGGAGGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGAATAAGGATGATGGAGAAGCACCCTTGGACCAATACAGACCAAAATCTAGAGGAGACTCAATACTTGCTTCGTGAGGCATCATCTAGCATTTATGAACCAGGTGACAGCAGCAACCATGGATATACTGGGTATGACAGCTTGAGAGATCATGTACTAATTGCCTTGGATGATGGGAGATGA 2217 0.4226 MEPKANHTQLLMVALAMVVAVAVAQNQTLAGCNSTCGNVEIPYPFGIGNSSMSPQRPCYMGPEFKLTCNDSKLTWAGANVSHIRIQQGQMDVSFFVSKLCKDPDGEANDPLLRSRYFTISSSENKFITVGCDTYGYLNSFYNGSTYSTGCLTRCYGSNPDMQIEKSDGNCTGIGCCQVDIPPGMKNITLQVYKFPNSTRSVENCSYSFIAKRGSYHFSAKHLEYLPNETFPLVVNWAVRNGSCQTANACKANSECDDKDTDYGYRCKCLDGYEGNPYHPDGCRDINECTTPNHKCISKENCMNNIGNYTCFCPKGHSGDGTKEGGCRRRDVITKVIIGVGAGVILLFVGTSSLYLMYQKRKLIKLKEKFFQQNGGVILLQQLSTREDSSQTAQIFTEDQLKKATNNYDEGLIIGRGGFGTVFKGFLADNRIVAVKKSKIIDASQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLFNFIHTEGKVNNVTWKARLRIAAEAAGALSYLHSAASIPIIHRDVKSTNILLDDTYTAKVSDFGASRLVPLDQTDIATMVQGTIGYLDPEYMQTSQLTDKSDVYSFGVVLAELLTGEKPISFDRPEEKRSLAMHLLSCLKEDCLFEILQVGILNEENKQEIQEVAILAAKCLRLVGEERPSMKEVAMELEGIRMMEKHPWTNTDQNLEETQYLLREASSSIYEPGDSSNHGYTGYDSLRDHVLIALDDGR* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02483 738 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Rops9g02483 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Rops9g02483 738 ProSiteProfiles Protein kinase domain profile. 407 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02483 738 Pfam Calcium-binding EGF domain 284 323 IPR001881 GO:0005509
Rops9g02483 738 Pfam Wall-associated receptor kinase galacturonan-binding 32 85 IPR025287 GO:0030247
Rops9g02483 738 SUPERFAMILY Protein kinase-like (PK-like) 388 678 IPR011009 -
Rops9g02483 738 FunFam Fibrillin 2 279 323 - -
Rops9g02483 738 FunFam Wall-associated receptor kinase 2 377 482 - -
Rops9g02483 738 CDD STKc_IRAK 413 680 - -
Rops9g02483 738 Gene3D Laminin 240 326 - -
Rops9g02483 738 SUPERFAMILY EGF/Laminin 284 319 - -
Rops9g02483 738 ProSitePatterns Calcium-binding EGF-like domain signature. 284 310 IPR018097 GO:0005509
Rops9g02483 738 Pfam Protein kinase domain 409 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02483 738 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Rops9g02483 738 Pfam Wall-associated kinase 169 268 IPR013695 GO:0004674|GO:0016020
Rops9g02483 738 SMART egf_5 242 283 IPR000742 -
Rops9g02483 738 SMART egf_5 287 327 IPR000742 -
Rops9g02483 738 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 687 IPR045274 GO:0007166
Rops9g02483 738 CDD EGF_CA 284 319 - -
Rops9g02483 738 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Rops9g02483 738 ProSiteProfiles EGF-like domain profile. 284 322 IPR000742 -
Rops9g02483 738 SMART egfca_6 284 327 IPR001881 GO:0005509
Rops9g02483 738 Gene3D Phosphorylase Kinase; domain 1 376 482 - -
Rops9g02483 738 Gene3D Transferase(Phosphotransferase) domain 1 483 704 - -
Rops9g02483 738 ProSiteProfiles EGF-like domain profile. 239 283 IPR000742 -
Rops9g02483 738 FunFam Wall-associated receptor kinase 2 483 700 - -
Rops9g02483 738 SMART serkin_6 407 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02483 Rops-Chr9 46437553 46440817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02483 7 738 Receptor kinase-like Gene Family AT1G21230 44.709 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops9g02483 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02483 - - gmx:106795446 1026.93