Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02481 ATGGAACTAAAGGTGAAGCCCGCGCAACTGTACTGGGTGCTAATGGCAGTATTAGCCCTGGTAGTAACAGTTGCAGTTGATCAAGCCCCTTCTGCAGCACCACGACCGACAAATCAAACCATGCCAGGCTGCAAGTTCACTTGTGGAAATGTCGAAATTCCATATCCATTCGGCATAGGCAATTCATCTATATCACCTGAACAACCCTGTTTCATGAATTCCAACTTCAGTCTCACTTGTGTAAATGACTCGAAATTATTTCTGGGAAATGTTCGAGTTTCACACATAGACATCCAAGGTGAAATGGAGGTGTCGTTTGGCGTCTCGAGGCTTTGTAAACATGATACCGATGGAAAGGCTAATTACCCTAGGCTCCGAAGTTGGTATTACACTGTTTCTAGCAGTGAAAACACGTTCATAACTGTTGGCTGCAACACTTACGGGTATCTCAACAGCTATTACGATGGGGACACTTATTCTACTGGGTGCTTGACAAGATGTTACGGTAGCAATCCTAATGTGCAAATTAGGAAGAGTGATGGGAATTGCACGGGTATAGGGTGTTGTCAGGTGGATATTCCTCCTGGGATGAAGAATATCACTCTAAAAGTTTACAAGTTCCCCAATTCAACAAGATCTGTGGAAAACTGCAGCTATTCATTTGTTGCAAAACGAGGGTCCTATCACTTTTCTGCCAAACATTTAAGGTATCTACCTAATGAAACGTTCCCCTTGGTCCTTAATTGGGCTGTTGGAAGTGGAACATGCCAAACGGCCAAGAGTGGAGACAGTGCTTGCAGGGCAAATAGTGAATGTGAAGACAAGGACACTGATAATGGTTACCGATGCAAATGTCTCCAAGGTTATGAAGGAAACCCGTACCATCCGGATGGCTGCAGAGACATTGACGAATGTACGACACCAAATCATAAATGCATAAGTAAAGAGAATTGTATGAACACCATTGGGAATTACACATGCTTCTGTCCTGAGGGGCACTCTGGAGATGGAACAAAGGAAGGAGGGTGCCACCAACGTGATGTAATTACCAAAGTCATCATTGGAGTAGGAGCAGGAGTTATTTTGCTATTTGTGGGGACTTCCTCGCTGTACTTAATGTACCAGAAAAGGAAACTCATCAAAGTCAAAGAGAAATTCTTTCAGCAGAATGGTGGTTTCATTTTGCTACAGCAACTCTCCACAAGAGAAGACTCCTCCCAAACTGCTCAAATTTTCACAGAAGATCAACTAAAGAAGGCCACCAACAACTATGACGAGGGCTTGATTATTGGCAGAGGAGGTTTTGGTACAGTTTTCAAAGGATTCCTAGCAGATAACAGAATTGTTGCTGTCAAGAAATCCAAAATAATAGATGCGAGCCAAATCGAGCAATTCATTAACGAGGTGGTTGTTCTATCCCAAATCAATCACAGGAATGTGGTCAAACTCTTGGGATGCTGTTTGGAGACAGAAGTTCCTTTACTGGTTTATGAATTTGTTAGCAATGGTACCCTTTTTAATTTTATACACACTGAAGGCAAGGTGAATAATGTAACATGGAAAACATGTCTAAGGATAGCAGCAGAGGCAGCTGGTGCTCTATCATATTTGCATTCAGCTGCCTCCATACCCATCATCCATAGAGATGTCAAGAGTACTAACATTCTCTTGGATGACACTTACACTGCCAAGGTGTCTGATTTTGGAGCTTCAAGATTAGTTCCGCTTGATCAAACTGACATAGCCACAATGGTGCAAGGAACTATTGGTTACTTAGACCCAGAGTATATGCAAACAAGCCACCTCACTGAGAAAAGTGATGTTTATAGCTTTGGGGTAGTGCTTGCCGAGCTGCTAACAGGGGAGAAACCTATTTCTTTTGACAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCACTTTCTGTCTTGCTTGAAAGAGGATTGCTTGTTTGAAATTCTTCAAGTTGGTATCTTGAATGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTATTCTTGTAGCAAAGTGCTTGAGACTTGTTGGGGAGGCAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGAATAAGGATGATGGAGAAGCACCCTTGGACCAATACAGACCAAAATCTAGAGGAGACTCAATACTTGCTTCGTGAGGCATCATCTAGCATTTATGAACCAGGCGATAGCAGCAACCATGGATATACTGGGTATGACAGCTTGAGAGATCATGTACTAATTGCTTTGGATGATGGGAGATGA 2268 0.4286 MELKVKPAQLYWVLMAVLALVVTVAVDQAPSAAPRPTNQTMPGCKFTCGNVEIPYPFGIGNSSISPEQPCFMNSNFSLTCVNDSKLFLGNVRVSHIDIQGEMEVSFGVSRLCKHDTDGKANYPRLRSWYYTVSSSENTFITVGCNTYGYLNSYYDGDTYSTGCLTRCYGSNPNVQIRKSDGNCTGIGCCQVDIPPGMKNITLKVYKFPNSTRSVENCSYSFVAKRGSYHFSAKHLRYLPNETFPLVLNWAVGSGTCQTAKSGDSACRANSECEDKDTDNGYRCKCLQGYEGNPYHPDGCRDIDECTTPNHKCISKENCMNTIGNYTCFCPEGHSGDGTKEGGCHQRDVITKVIIGVGAGVILLFVGTSSLYLMYQKRKLIKVKEKFFQQNGGFILLQQLSTREDSSQTAQIFTEDQLKKATNNYDEGLIIGRGGFGTVFKGFLADNRIVAVKKSKIIDASQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLFNFIHTEGKVNNVTWKTCLRIAAEAAGALSYLHSAASIPIIHRDVKSTNILLDDTYTAKVSDFGASRLVPLDQTDIATMVQGTIGYLDPEYMQTSHLTEKSDVYSFGVVLAELLTGEKPISFDRPEEKRSLAMHFLSCLKEDCLFEILQVGILNEENKQEIKEVAILVAKCLRLVGEARPSMKEVAMELEGIRMMEKHPWTNTDQNLEETQYLLREASSSIYEPGDSSNHGYTGYDSLRDHVLIALDDGR* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02481 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Rops9g02481 755 Pfam Calcium-binding EGF domain 301 340 IPR001881 GO:0005509
Rops9g02481 755 ProSitePatterns Calcium-binding EGF-like domain signature. 301 327 IPR018097 GO:0005509
Rops9g02481 755 Pfam Wall-associated receptor kinase galacturonan-binding 44 100 IPR025287 GO:0030247
Rops9g02481 755 Gene3D Laminin 254 343 - -
Rops9g02481 755 SUPERFAMILY EGF/Laminin 301 336 - -
Rops9g02481 755 Pfam Protein kinase domain 426 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02481 755 FunFam Wall-associated receptor kinase 2 500 717 - -
Rops9g02481 755 SUPERFAMILY Protein kinase-like (PK-like) 405 695 IPR011009 -
Rops9g02481 755 SMART serkin_6 424 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02481 755 Gene3D Phosphorylase Kinase; domain 1 394 499 - -
Rops9g02481 755 FunFam Fibrillin 2 296 340 - -
Rops9g02481 755 ProSitePatterns Protein kinases ATP-binding region signature. 430 453 IPR017441 GO:0005524
Rops9g02481 755 SMART egfca_6 256 300 IPR001881 GO:0005509
Rops9g02481 755 SMART egfca_6 301 344 IPR001881 GO:0005509
Rops9g02481 755 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 318 329 IPR000152 -
Rops9g02481 755 SMART egf_5 255 300 IPR000742 -
Rops9g02481 755 SMART egf_5 304 344 IPR000742 -
Rops9g02481 755 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 704 IPR045274 GO:0007166
Rops9g02481 755 Gene3D Transferase(Phosphotransferase) domain 1 500 721 - -
Rops9g02481 755 FunFam Wall-associated receptor kinase 2 394 499 - -
Rops9g02481 755 CDD EGF_CA 301 336 - -
Rops9g02481 755 CDD STKc_IRAK 430 697 - -
Rops9g02481 755 ProSiteProfiles EGF-like domain profile. 301 339 IPR000742 -
Rops9g02481 755 ProSiteProfiles Protein kinase domain profile. 424 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02481 Rops-Chr9 46383128 46386824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02481 15 755 Receptor kinase-like Gene Family AT1G21230 44.269 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops9g02481 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02481 - - gsj:114381577 1036.17