Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02480 ATGGAACTAAAATTGAAGCACGCACAATTGTACCATGTGCTGATGATAGCTTTAGCCCTGGTTGTAGCAGATGCTGTTGATCAAGCCCTTTCTGCTGCACCAAAAGAACCACCAAAACAAACCATGCCTGGCTGCAATTCCACTTGTGGAAATGTCGAAATTCCATATCCATTCGGCATAGGAAATTCATCTATATCACCTCAACAACCCTGTTTCATGGATCCGAAATTTAATCTCACTTGTGTAAACGACACAAAATTATTTCGGGGAAATGTATCAGTTTCACACATAGACATCCAAGGTCAAATGGAAGTGTCGTTTTTCGTCTCAAGGCTTTGCAAAAATGATACCGATGGAGACAATTATTATTACCCCAGTCTCCAAAGTGAGTATTACACCATTTCTAGCAGTGAAAACACGTTCATAACTGTTGGCTGTGACACTTTCGGGAATCTCGACAGCTTTTACGATGGGAACGCTTATTCTACGGGGTGCTTAACAAGATGTTACGGTAGAAATCCTGATATGCTGATTAGGAAGAGCCATGGGAACTGCACGGGTATAGGGTGTTGTCAGGTAGATATTCCTCCTGGAATGAAGAATATCACTCTACAAGTTCACAAGTACCCCAATTCAACCGAATCTCTGGGATACTGCAGCTATTCCTTTGTTGCAAAACGAGGGTCCTATAATTTTTCTATCGAAGACTTATGGAATCTACCTTCCACAGAGTTCCCCTTGGTCATTGATTGGGCTATTGGAAATGAAACATGTCAAACTGCAAAGAATAGAGATGACTATGCCTGCAAGGCAAATAGCGGATGTGACAATAAGGAGGATTATGGTTACCGATGCAAATGTCTTCAAGGTTACGGAGGAAACCCGTACCATCGGGCTGGCTGTACAGACATTGACGAATGTACAACAGGAAATCATAAATGCACAAGTAAAGAGAATTGTAAGAACACCAATGGGTCTCACACATGCTTCTGTCCTAAGGGGCATTCCGGAGATGGAACAAAGGAAGGAGGGTGCCGCCGACGTGATGTACTTACCAAGATTGTCATTGTAGTAGGAGCAGGAACAGCATTTCTAGTGCTATTTGTGGGGACTTCCTTGCTGTACATAACATACCAGAAAAGGAAATTCATCAAACTAAAAGAGAAATTCTTTCTGCAGAATGCTGCCTCCATACCCATCATCCATAGAGATGTCAAGAGTACTAACATTCTCTTGGATGACACTTACACTGCCAAGGTGTCTGATTTTGGAGCTTCAAGATTAGTTCCGCTTGATCAAACTGACATAGCCACAATGCAAGGAACTATTGGTTACTTAGACCCAGAGTATATGCAAACAAGCCACCTCACTGAGAAAAGTGATGTTTATAGCTTTGGGGTAGTGCTTGCCGAGCTGCTAACAGGGGAGAAACCTATTTCTTTTGACAGCCTTGGTATCTTGAATGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTATTCTTGTAGCAAAGTGCTTGAGACTTGTTGGGGAGGCAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGAATAAGGATGATGGAGAAGCACCCTTGGACCAATACAGACCAAAATCTAGAGGAGACTCAATACTTGCTTCGTGAGGCATCATCTAGCATTTATGAACCAGGCGATAGCAGCAACCATGGATATACTGGGTATGACAGCTTGAGAGATCATGTACTAATTGCCATGGATGATGGGAGATGA 1755 0.4279 MELKLKHAQLYHVLMIALALVVADAVDQALSAAPKEPPKQTMPGCNSTCGNVEIPYPFGIGNSSISPQQPCFMDPKFNLTCVNDTKLFRGNVSVSHIDIQGQMEVSFFVSRLCKNDTDGDNYYYPSLQSEYYTISSSENTFITVGCDTFGNLDSFYDGNAYSTGCLTRCYGRNPDMLIRKSHGNCTGIGCCQVDIPPGMKNITLQVHKYPNSTESLGYCSYSFVAKRGSYNFSIEDLWNLPSTEFPLVIDWAIGNETCQTAKNRDDYACKANSGCDNKEDYGYRCKCLQGYGGNPYHRAGCTDIDECTTGNHKCTSKENCKNTNGSHTCFCPKGHSGDGTKEGGCRRRDVLTKIVIVVGAGTAFLVLFVGTSLLYITYQKRKFIKLKEKFFLQNAASIPIIHRDVKSTNILLDDTYTAKVSDFGASRLVPLDQTDIATMQGTIGYLDPEYMQTSHLTEKSDVYSFGVVLAELLTGEKPISFDSLGILNEENKQEIKEVAILVAKCLRLVGEARPSMKEVAMELEGIRMMEKHPWTNTDQNLEETQYLLREASSSIYEPGDSSNHGYTGYDSLRDHVLIAMDDGR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02480 584 Pfam Protein kinase domain 400 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02480 584 FunFam Fibrillin 2 298 342 - -
Rops9g02480 584 ProSiteProfiles EGF-like domain profile. 303 341 IPR000742 -
Rops9g02480 584 SMART egfca_6 303 346 IPR001881 GO:0005509
Rops9g02480 584 Gene3D Transferase(Phosphotransferase) domain 1 391 556 - -
Rops9g02480 584 SMART serkin_6 251 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02480 584 Pfam Wall-associated receptor kinase galacturonan-binding 45 102 IPR025287 GO:0030247
Rops9g02480 584 Gene3D Laminin 255 306 - -
Rops9g02480 584 SUPERFAMILY EGF/Laminin 303 338 - -
Rops9g02480 584 Gene3D Laminin 307 345 - -
Rops9g02480 584 ProSiteProfiles Protein kinase domain profile. 210 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02480 584 CDD EGF_CA 303 338 - -
Rops9g02480 584 SUPERFAMILY Protein kinase-like (PK-like) 395 540 IPR011009 -
Rops9g02480 584 Pfam Calcium-binding EGF domain 303 342 IPR001881 GO:0005509
Rops9g02480 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Rops9g02480 584 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 394 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02480 Rops-Chr9 46251341 46264018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02480 343 584 Receptor kinase-like Gene Family AT1G21230 41.912 1.01e-50 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops9g02480 Pkinase 4.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02480 - - gmx:100781051 425.631