Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02465 ATGAAATGCTGCTGGAGCACGATTCACAAACCTCACCAGCCCCATGCACGTGAAGTTGCACCCCTCCAGGCCACCAAAGTTCCACGTATTGAGGCTATGTTTCAACATGTGATGCATGCAACAAGGAGGAGCAACTCGATGGAGATAGGTGAGAGCTCTCCTCCACACGACCTCAGCAAGCTCACGTGCGTGGAACCATTTCATCGCCATGCACCTCACAATTCTAGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAAGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTATTGCATGGACCAAATCCTAACACTGGCAATAAAGTAGCTACTCAGGGACCAATGACCAGCCAAGGAGCTGAGAATCCAGGTTTTAAGAAGCCTTTTGGCGGCATTGAAAAGTGTACACAAGAAATGAAAACTTCCCAAGGAAATGTTGCAAGGTCTGTTGGAGGTGCTGAGGCTAAACCTACCCTAAAAGTTGAAACTGCTCCACGGAAAAATACGTTTGAATTGGAGAAGCATGTACCGCCGCCACCTGTAGGATTTGATAATGAGACTTCAAGATTTAAGATAACAAGTTCTCCACCAGTGACCAATGGGTCCACTGTAACCCGATCTAATCGTGTGCATCAAGATCATAGTTTCCATGGTGATGCTACAGTTACCAAAGTCATTCACTTCACAAGACGTGGGCAAGAAGTAGAAACTGGAACTGTGTTAGATCTTCTCCTCATTAGTTCAGGACCAGCCAGAGCTCGTGAAAGTTGCTCAATTTGTGCAGCGTCCCAAGACGAGCATGGGGTCATCTCCTCATGCCTGAACTGCTTCCTAGCCGGTAGTGTCCTGTATCGGTTTGAGTATGTTGTCTCCCCTGCTCTCTTCCTCGCTAAAGCCCGTGGTGGAACGTGTACTCTTGCAGTCTCGGACCAAAATGATATTGTGGTCCATAGAGCAAAGTATCTGCTTGAAAATGGCTTTCGTTGCTATAGTATTTTCAAGAACAATTGTGAAGACTTTGCCATCTATTGCAAAACTGGGCTCCTAGTTGTTGATAAAGGACCAAGATTGGCAGGCATTCGAGTAGGAAGCTCGAGAGGAACCCACCATCATCAACAGAGTCATGACCTCAACGCTTGCATAGAGGAAGGAGTGTGA 1161 0.4651 MKCCWSTIHKPHQPHAREVAPLQATKVPRIEAMFQHVMHATRRSNSMEIGESSPPHDLSKLTCVEPFHRHAPHNSSKQAVPCIFFQKGLCLKGDRCALLHGPNPNTGNKVATQGPMTSQGAENPGFKKPFGGIEKCTQEMKTSQGNVARSVGGAEAKPTLKVETAPRKNTFELEKHVPPPPVGFDNETSRFKITSSPPVTNGSTVTRSNRVHQDHSFHGDATVTKVIHFTRRGQEVETGTVLDLLLISSGPARARESCSICAASQDEHGVISSCLNCFLAGSVLYRFEYVVSPALFLAKARGGTCTLAVSDQNDIVVHRAKYLLENGFRCYSIFKNNCEDFAIYCKTGLLVVDKGPRLAGIRVGSSRGTHHHQQSHDLNACIEEGV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02465 386 ProSiteProfiles LRAT domain profile. 204 354 IPR007053 -
Rops9g02465 386 PANTHER OS05G0310600 PROTEIN 217 356 - -
Rops9g02465 386 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Rops9g02465 386 Pfam Lecithin retinol acyltransferase 225 350 IPR007053 -
Rops9g02465 386 Gene3D endopeptidase domain like (from Nostoc punctiforme) 217 355 - -
Rops9g02465 386 ProSiteProfiles Zinc finger C3H1-type profile. 76 103 IPR000571 GO:0046872
Rops9g02465 386 SUPERFAMILY CCCH zinc finger 77 101 IPR036855 GO:0046872
Rops9g02465 386 Gene3D - 66 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02465 Rops-Chr9 45806264 45808262 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops9g02465 LRAT 8e-20 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02465 - - aprc:113872742 239.58