Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02455 ATGCGTGTGAGCGGTGGAGGAGACCAACACTTTGAACAACAAGAACAAGATTGCTGGAGGACGGAACACTCGATAACAGCGACAAAGAAGAAGAAAGTGGTTGTGGTTTCAGACGGTGGGAAGTTCTTGCAACAAAACATTTGTGGTGTCCTGAGCCACCATCAAACTGCCATGGATGATTCTTCAACAGTAGGTGAGGACACCAAGACTTGTCCCCGTGGTCACTGGATACCCGCTGAGGATGAAAAGCTCCGGAACCTTGTTGAACAATATGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAACTAGATCCCAGGATCAACAGAAGGCCATTTACAGAAGATGAAGAAGAGAGGCTACTTGCAGCTCACCGTATTCACGGTAACAAATGGGCACTCATAGCAAGGCTCTTCCCAGGTCGAACTGATAATGCTGTGAAGAATCACTGGCATATTATAATGGCACGAAAACAAAGGGAACAATCAAAGCTATGTGGGAAGAGAAGCTTCCAAGATTTTTATATCGACTCCTCATCTTCTAATATTGGTTTTCCCCATAAAGGAACAACAAGAACTCATGAACTATTATTTAGCTCGAGAATTGGGTTAGAGAATGCAAGACTCTTTGACTTCAGAAACCTCTATAATAAAGAAAAGATAGTTGCAGCAGCAAATTCTAATTCCAGTTCTTTGGCCTATTGGAATTTTGGGTCCTTCACAGATAGTTCTCCTCGTGTGGCTGATTCATCATTTAGGAAAGAAGGGAGAGATAATTTCAGTAATTCTTGCTCTAAGAATGTTTATCTTTCAGAAAGCTCAAAAATCTCAGATAGATTTCTTCAGAGAATTTATCCTAATACTACATCATTCGGAAGCTTTCGAGGTTCCAACATATTCACGCTTCCAAGTCATTTTGGAAACCTTGGTTCTGCTAATGATGGAAGGATAAAAAGGGACTTGATGAGTTTATGTGATAACTCATCAACATCTACAAAGTTGAGCACTTCTTCCACAGAGCAAGAGCAAGCACATGAGTCCAATAATATTGAACGGAATGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCACGATGA 1155 0.4121 MRVSGGGDQHFEQQEQDCWRTEHSITATKKKKVVVVSDGGKFLQQNICGVLSHHQTAMDDSSTVGEDTKTCPRGHWIPAEDEKLRNLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHIIMARKQREQSKLCGKRSFQDFYIDSSSSNIGFPHKGTTRTHELLFSSRIGLENARLFDFRNLYNKEKIVAAANSNSSSLAYWNFGSFTDSSPRVADSSFRKEGRDNFSNSCSKNVYLSESSKISDRFLQRIYPNTTSFGSFRGSNIFTLPSHFGNLGSANDGRIKRDLMSLCDNSSTSTKLSTSSTEQEQAHESNNIERNEVPFIDFLGVGVSSSR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02455 384 FunFam MYB transcription factor 126 195 - -
Rops9g02455 384 Gene3D - 73 124 - -
Rops9g02455 384 SMART sant 72 121 IPR001005 -
Rops9g02455 384 SMART sant 124 172 IPR001005 -
Rops9g02455 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 119 IPR017930 -
Rops9g02455 384 CDD SANT 76 117 IPR001005 -
Rops9g02455 384 FunFam MYB transcription factor 73 124 - -
Rops9g02455 384 ProSiteProfiles Myb-like domain profile. 73 119 IPR001005 -
Rops9g02455 384 Gene3D - 127 186 - -
Rops9g02455 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 174 IPR017930 -
Rops9g02455 384 CDD SANT 127 167 IPR001005 -
Rops9g02455 384 ProSiteProfiles Myb-like domain profile. 120 170 IPR001005 -
Rops9g02455 384 PANTHER MYB PROTEIN-RELATED 73 343 - -
Rops9g02455 384 MobiDBLite consensus disorder prediction 344 364 - -
Rops9g02455 384 SUPERFAMILY Homeodomain-like 72 166 IPR009057 -
Rops9g02455 384 Pfam Myb-like DNA-binding domain 76 136 - -
Rops9g02455 384 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02455 Rops-Chr9 45507584 45510341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02455 71 180 MYB Transcription Factor Family AT1G17950 81.818 1.36e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02455 Myb_DNA-bind_6 9.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02455 K09422 - gmx:100802283 385.185