Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02453 ATGGGAGAAGAAAGCGAGGGTAGAGTGACAAAGCCTTATACATCCACCAAGCTCACCAACATTGAAGTGACTTTTGCAAAGTTCTTGCAACAAAACATTTGTGGTGTCCTGAGCCACCATCAAACTGCCATGGATGATTCTTCAACAGTAGGTGAGGACACCAAGACTTGTCCCCGTGGTCACTGGAGACCCGCTGAGGATGAACAGCTCCAGCAACTTGTTAAACAATATGGTGCCCAGAACTGGAATTCAATTTCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTAGATCCCAGGATCAACAGAAGGCCATTTACAGAAGATGAAGAAGAGAGGCTACTTGCAGCTCACCGTATTCACGGTAACAAATGGGCACTCATAGCAAGGCTCTTCCCAGGTCGAACTGATAATGCTGTGAAGAATCACTGGCATATTATAATGGCACGAAAACAAAGGGAACAATCAAAGCTATGTGGGAAGAGAAGCTTCCAAGATTTTTATATCGACTCCTCATCTTCTAATATTGGTTTTCCCCATAAAGGAACAACAAGAACTCATGAACTATTATTTAGCTCGAGAATTGGGTTAGAGAATGCAAGACTCTTTGACTTCAGAAACCTCTATAATAAAGAAAAGATAGTTGCAGCAGCAAATTCTAATTCCAGTTCTTTGGCCTATTGGAATTTTGGGTCCTTCACAGATAGTTCTCCTCGTGTGGCTGATTCATCATTTAGGAAAGAAGGGAGAGATAATTTCAGTAATTCTTGCTCGAAGAATGTTTATCTTTCAGAAAGCTCAAAAATCTCAGATAGATTTCTTCAGAGAATTTATCCTAATACTACATCCTTCGGAAGCTTTCGAGGTTCCAACATATTCACGCTTCCAAGTCATTTTGGAAACCTTGGTTCTGCTAATGATGGAAGGATAAAAAGGGACTTGATGAGTTTATGTGATAACTCATCAACATCTACAAAGTTGAGCACTTCTTCCACAGAGCAAGAGCAAGAGCAAGCAGATGATTCCAATAATATTGAACGGAATGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATGA 1116 0.4068 MGEESEGRVTKPYTSTKLTNIEVTFAKFLQQNICGVLSHHQTAMDDSSTVGEDTKTCPRGHWRPAEDEQLQQLVKQYGAQNWNSISEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHIIMARKQREQSKLCGKRSFQDFYIDSSSSNIGFPHKGTTRTHELLFSSRIGLENARLFDFRNLYNKEKIVAAANSNSSSLAYWNFGSFTDSSPRVADSSFRKEGRDNFSNSCSKNVYLSESSKISDRFLQRIYPNTTSFGSFRGSNIFTLPSHFGNLGSANDGRIKRDLMSLCDNSSTSTKLSTSSTEQEQEQADDSNNIERNEVPFIDFLGVGVSSS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02453 371 CDD SANT 62 103 IPR001005 -
Rops9g02453 371 ProSiteProfiles Myb-like domain profile. 59 105 IPR001005 -
Rops9g02453 371 Pfam Myb-like DNA-binding domain 62 122 - -
Rops9g02453 371 PANTHER MYB PROTEIN-RELATED 59 337 - -
Rops9g02453 371 FunFam MYB transcription factor 112 181 - -
Rops9g02453 371 MobiDBLite consensus disorder prediction 329 354 - -
Rops9g02453 371 CDD SANT 113 153 IPR001005 -
Rops9g02453 371 SUPERFAMILY Homeodomain-like 58 152 IPR009057 -
Rops9g02453 371 Gene3D - 59 110 - -
Rops9g02453 371 ProSiteProfiles Myb-like domain profile. 106 156 IPR001005 -
Rops9g02453 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 105 IPR017930 -
Rops9g02453 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 160 IPR017930 -
Rops9g02453 371 MobiDBLite consensus disorder prediction 329 346 - -
Rops9g02453 371 FunFam MYB transcription factor 59 110 - -
Rops9g02453 371 SMART sant 58 107 IPR001005 -
Rops9g02453 371 SMART sant 110 158 IPR001005 -
Rops9g02453 371 Gene3D - 113 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02453 Rops-Chr9 45463566 45465827 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02453 57 166 MYB Transcription Factor Family AT1G17950 79.091 1.81e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02453 Myb_DNA-bind_6 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02453 K09422 - gmx:100802283 386.341