Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02449 ATGGATGATTCTTCAACAGTAGGTGAGGACACCAAGACTTGTCCCCGTGGTCACTGGAGACCCGCTGAGGATGAAAAGCTCCGGAACCTTGTTGAACAATATGGTGCCCAGAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAACTAGATCCCAGGATCAACAGAAGGCCATTTACAGAAGATGAAGAAGAGAGGCTACTTGCAGCTCACCGTATTCACGGTAACAAATGGGCACTCATAGCAAGGCTCTTCCCAGGTCGAACTGATAATGCTGTGAAGAATCACTGGCATATTATAATGGCACGAAAACAAAGGGAACAATCAAAGCTATGTGGGAAGAGAAGCTTCCAAGATTTTTATATCGACTCCTCATCTTCTAATATTGGTTTTCCCCATAAAGGAACAACAAGAACTCATGAACTATTATTTAGCTCGAGAATTGGGTTAGAGAATGCAAGACTCTTTGACTTCAGAAACCTCTATAATAAAGAAAAGATAGTTGCAGCAGCAAATTCTAATTCCAGTTCTTTGGCCTATTGGAATTTTGGGTCCTTCACAGATAGTTCTCCTCGTGTGGCTGATTCATCATTTAGGAAAGAAGGGAGAGATGATTTCAGTAATTCTTGCTCTAAGAATGTTTATCTTTCAGAAAGCTCAAAAATCTCAGATAGATTTCTTCAGAGAATTTATCCTAATACTACATCCTTCGGAAGCTTTCGAGGTTCCAACATATTCACGCTTCCAAGTCATTTTGGAAACCTTGGTTCTGCTAATGATGGAAGGATAAAAAGGGACTTGATGAGTTTATGTGATAACTCATCAACATCTACAAAGTTGAGCACTTCTTCCACAGAGCAAGAGCAAGCACATGAGTCCAATAATATTGAACGGAATGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCACGATGA 984 0.4035 MDDSSTVGEDTKTCPRGHWRPAEDEKLRNLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHIIMARKQREQSKLCGKRSFQDFYIDSSSSNIGFPHKGTTRTHELLFSSRIGLENARLFDFRNLYNKEKIVAAANSNSSSLAYWNFGSFTDSSPRVADSSFRKEGRDDFSNSCSKNVYLSESSKISDRFLQRIYPNTTSFGSFRGSNIFTLPSHFGNLGSANDGRIKRDLMSLCDNSSTSTKLSTSSTEQEQAHESNNIERNEVPFIDFLGVGVSSSR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02449 327 PANTHER MYB PROTEIN-RELATED 16 292 - -
Rops9g02449 327 MobiDBLite consensus disorder prediction 1 20 - -
Rops9g02449 327 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops9g02449 327 SMART sant 67 115 IPR001005 -
Rops9g02449 327 SMART sant 15 64 IPR001005 -
Rops9g02449 327 MobiDBLite consensus disorder prediction 287 302 - -
Rops9g02449 327 MobiDBLite consensus disorder prediction 287 307 - -
Rops9g02449 327 FunFam MYB transcription factor 69 138 - -
Rops9g02449 327 FunFam MYB transcription factor 16 67 - -
Rops9g02449 327 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Rops9g02449 327 CDD SANT 70 110 IPR001005 -
Rops9g02449 327 Gene3D - 70 129 - -
Rops9g02449 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops9g02449 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Rops9g02449 327 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Rops9g02449 327 CDD SANT 19 60 IPR001005 -
Rops9g02449 327 Gene3D - 16 67 - -
Rops9g02449 327 Pfam Myb-like DNA-binding domain 19 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02449 Rops-Chr9 45447946 45457545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02449 14 123 MYB Transcription Factor Family AT1G17950 82.727 1.71e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02449 Myb_DNA-bind_6 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02449 K09422 - gmx:100802283 386.341