Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02447 ATGGATTCCTCGGAGGTGAAAAGCGAAGCCCTTTGTCGCAACGAAGAGGATTCTACAACTAACAACAAATGCAGCAAGTTCTACAATGTTTATGGACTCCAGGGCAAGGCAGATGTTGTTTTCAAGTCACCAGAAGACAATTCGACTCTGAATCTTAATGACGTTCAAGGGCTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCATCATGGGTTTTTATCAAGAACAAACCTCTTATTCAAAAAGTGGTTATGCTCTATTTGCCAGGCCTGGATGCAGCTTTGTTCTTGTCGCAGTCTAAAATACTTCCCAGTTTAAAAAAATTCTGTGGCAAACCAAGGCCAGTCCTGGCTCTTAGCTGGGTATCAGATGGTATGCAGACAATAGATGCACTCCTAACATGCAAGCTGAAAAGAAAGAGGGATCAAAATGGTTCAGTTATGAGGAAATCTACTCTGATATCTCAACAAGAAGGCAGTGCTGGTACTGACAGTCTATCATTCATGGAGCTTACAAAAGACATACCTTTCCCTGTTACATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGTTTTCTTTCTACTTTGCCTGCTCCTTTGGGATCTCCTTTTCATGAGATGTTGGCTCTTGATTGTGAGATGTGCATAACAAGTGAGGGTTTTGAGCTGACAAGAGTTACTCTAGTGGATGTTAAAGGACAGGTTTTGATAGATAAATTGGTTAGACCATCAAATGCTATCACTGATTACAACACAAGATATAGTGGAATAACTTCTGAGTTGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTTATAAAACTGGTTTACAAAGAGACTATCCTCGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCTCATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGGTCATCTCATAAAACTGCTCTACGGATTCTTGCCAAGAAATTTCTTTCAAGGGAGATACAGCAATCAGGAAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCACTACTAAAGATCAGAAATGGGCCCGACTTTGGTTCCCCTCCATCCTTTATGCGGAAAAAGCTTCTTTCCATTTTGAGCGAGTCTGGCAAAATTTCCTCATTGATTGATGATATATCTGTAGTAAAACGATATGCCTCCGAGTCCTCTAATGCAATTCCGGTGACCTCTGATGAAGAAGCACTTGCAAAGACCAACAAAGAGTTGAAGAATGAAAAGGTACATTTTATCTGGACTCAGTTTTCAGAGTTACACTCATACTTGAAGAAACAAGCTGAAGATTCAGAGACCTTGAATAAAAGACTTGCAGAGATGATGGCATTAAATACATGTCAGAAGAATACTGAAAAAGGGAAAGGCTTCAGATTAAAAACATCGGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCGTAATCTATATATGTCATTACCAACAAATGCTATGATGATAATTTGCACCGGTCATGGAGACACAGCTGTGGTCCGCAGGCTGAGGAAAATGCTTGCTGAGGAGAATGAAAGCAATTTATGTCGTGAGAAGATTGTGGAAATATTGGAAGAGTTTCAGGCTAGAGCTGAACTAGCCTTGTGTTTTGTAGGTGTAAAGCATTGA 1716 0.4027 MDSSEVKSEALCRNEEDSTTNNKCSKFYNVYGLQGKADVVFKSPEDNSTLNLNDVQGLVTWVLGEGFMPSWVFIKNKPLIQKVVMLYLPGLDAALFLSQSKILPSLKKFCGKPRPVLALSWVSDGMQTIDALLTCKLKRKRDQNGSVMRKSTLISQQEGSAGTDSLSFMELTKDIPFPVTYYTLTEKDLEENGYSVNKPGFLSTLPAPLGSPFHEMLALDCEMCITSEGFELTRVTLVDVKGQVLIDKLVRPSNAITDYNTRYSGITSELLDGVTTSLRDIQEEFIKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKTALRILAKKFLSREIQQSGNGHDSIEDARATMELALLKIRNGPDFGSPPSFMRKKLLSILSESGKISSLIDDISVVKRYASESSNAIPVTSDEEALAKTNKELKNEKVHFIWTQFSELHSYLKKQAEDSETLNKRLAEMMALNTCQKNTEKGKGFRLKTSAELKEILARMDARIRNLYMSLPTNAMMIICTGHGDTAVVRRLRKMLAEENESNLCREKIVEILEEFQARAELALCFVGVKH* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02447 571 CDD REX1_like 217 366 IPR034922 -
Rops9g02447 571 FunFam RNA exonuclease NEF-sp 213 376 - -
Rops9g02447 571 Gene3D - 213 374 IPR036397 GO:0003676
Rops9g02447 571 SMART exoiiiendus 215 374 IPR013520 -
Rops9g02447 571 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 37 390 IPR047021 GO:0004527
Rops9g02447 571 SUPERFAMILY Ribonuclease H-like 216 369 IPR012337 -
Rops9g02447 571 Pfam Exonuclease 218 364 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02447 Rops-Chr9 45418266 45428836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02447 216 364 C2H2 Transcription Factor Family AT3G27970 28.235 2.14e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02447 K14570 - gmx:100802793 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02447 9 45418266 45428836 Rops9g02447 9 45418266 45428836 ECH