Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02446 ATGTCGCGTTCACTGGTGCAGCCCATAGGGCAGAAGAGGTTAACGAACGTGGCGGTGGTGCGTTTGAAAAAGCACGGCATGCGCTTCGAAATCGCCTGTTACCCAAACACGGTCCTATCTTGGCGTTCCGGCGTGGAGAAGGACCTGGATGAAGTGTTGCAGTCCCACACCGTTTATTCCAATGTTTCTAAAGGTGTTCTTGCCAAATCTAAGGATTTGATCGCAGCTTTTGGCACCGATGATCACTCCAAAATATGCTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTTGCTGGCAAAGAGAGGGAATCATTGCTGGCGAGTCAGTTCAGGGACATTGCCACCATTGTGATGCACAAGACTTATAATCCGGAGACTCAGCGCCCTTTCACTATCAGCATGATCGAACGCCTCATGAGGGACATCCATTTTGCCGTTGATCCTAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAAAAACACTTCCCTATAAAACGGTGTCCATTGAGAATACGTGCTGTTGCTCCTGAGGAGCAAGTGCCTGCCCTTTTAGAGAAGCTGAATGAGTGGAAGGCAACTGTTATCTCCAAAGAAGGGTCTGCTGCTCAGCTATCTGTTATTTTTGAATTGGAACCTGGTCTATACAAGGACTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTCGAAGTTCTTGCACACTCTTTTTATTGGGATGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATGCCTCTACCATTGCCCAAAGAAACTCGTGAATCTGTGCTAGAGCTGAATGATAAACTTGAAAAGCAAACAATTTCATCTGTGAGTAGGCCTGCTGAGGGACAACAACCAAAGCAAAACAAGTGCAGCGCATGCAATGTTTTTTTTGAAGACTCTAAGCTATACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAAGAAGAGTGCATGGCAGATACGGAATTGGGTGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1080 0.4546 MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDHSKICLEILKKGELQVAGKERESLLASQFRDIATIVMHKTYNPETQRPFTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHFPIKRCPLRIRAVAPEEQVPALLEKLNEWKATVISKEGSAAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSFYWDGDTQVEQYNDYEDMPLPLPKETRESVLELNDKLEKQTISSVSRPAEGQQPKQNKCSACNVFFEDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADTELGDSKSDLKDYSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02446 359 FunFam SBDS, ribosome maturation factor 100 172 - -
Rops9g02446 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Rops9g02446 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Rops9g02446 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Rops9g02446 359 Gene3D - 1 96 IPR036786 -
Rops9g02446 359 FunFam SBDS, ribosome maturation factor 3 96 - -
Rops9g02446 359 NCBIfam ribosome assembly factor SBDS 13 232 IPR002140 GO:0042256
Rops9g02446 359 Gene3D Classic Zinc Finger 289 348 - -
Rops9g02446 359 MobiDBLite consensus disorder prediction 319 359 - -
Rops9g02446 359 Gene3D - 174 251 - -
Rops9g02446 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Rops9g02446 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Rops9g02446 359 SUPERFAMILY beta-beta-alpha zinc fingers 294 343 IPR036236 -
Rops9g02446 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Rops9g02446 359 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Rops9g02446 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 241 IPR039100 -
Rops9g02446 359 Gene3D - 100 172 IPR037188 -
Rops9g02446 359 MobiDBLite consensus disorder prediction 344 359 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02446 27 359 C2H2 Transcription Factor Family AT1G43860 57.681 1.34e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02446 K14574 - gmx:100797497 656.751