Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02431 ATGGAGCATGGAAGCCATGACCATCAGACAAAATCAAGCTCTGATTCAGACCCTTTGCAGGTAGAGAACCCAATCACAAACACTGATGAAGCTCCAAGCAACCCCGACAATGTTGATGCTACAATTGAGGAACAACCTCGCAACATGGTTGCACAGGACGAGGAGCAGTGTGTGCCCATTTCCAACGTGAATCGAATCATGCGGCGTGTTCTTCCGCCGCACTCAAAAATCTCTGACGATGCCAAGGAAGCCATGCAAGCCTGTGTTTCAGAGTTCATAGGCTTCATTACCAGTGAGGCCAACGAGCGATGCCAGCAAGAGCATCGAAGGATCGTTACAGCAGAAGATATACTTTGGGCCATGGAGAGGTTGGGCTTCGAAGACTATATTGGGCCTCTAATTGTTTACCTCCAACGCTATCGTGGGAATGAGGTTGGGTCATTGGCCCATCTTGGGAGGCATGTTCCTCTGAGGCCGAATGTTGCGAGTTATGGTGTGCCTCCACCACCACTATCACAACAAGCTCGACCACTGGGTTCTTTCTATAGGTCTTTGTTCCCTACCACTCCGGGAATGTTTGGTTCCAGTGGCGCGGGTGGGTTCAACAAAGATGGGTCGGGTGCTAGTGGCTCGCGCAGGGCCAGTGGCAATGACAAACCTTGA 663 0.5113 MEHGSHDHQTKSSSDSDPLQVENPITNTDEAPSNPDNVDATIEEQPRNMVAQDEEQCVPISNVNRIMRRVLPPHSKISDDAKEAMQACVSEFIGFITSEANERCQQEHRRIVTAEDILWAMERLGFEDYIGPLIVYLQRYRGNEVGSLAHLGRHVPLRPNVASYGVPPPPLSQQARPLGSFYRSLFPTTPGMFGSSGAGGFNKDGSGASGSRRASGNDKP* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02431 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 33 144 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops9g02431 220 SUPERFAMILY Histone-fold 55 143 IPR009072 GO:0046982
Rops9g02431 220 MobiDBLite consensus disorder prediction 194 220 - -
Rops9g02431 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 121 IPR003958 -
Rops9g02431 220 Gene3D Histone, subunit A 47 149 IPR009072 GO:0046982
Rops9g02431 220 MobiDBLite consensus disorder prediction 14 40 - -
Rops9g02431 220 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Rops9g02431 220 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Rops9g02431 220 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Rops9g02431 220 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02431 Rops-Chr9 45116567 45119690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02431 1 169 CCAAT-HAP3 Transcription Factor Family AT1G21970 44.324 4.92e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops9g02431 CBFD_NFYB_HMF 4.3e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02431 K08065 - tcc:18597346 157.918