Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02424 ATGTCAAGCAATGCGTTAACTATTTTTATCTTGTTTCTTAATATCTCCTTGTTTCCAGCCACTTCTGCTCTGAACAGGGAAGGTCTTTCCCTACTTTCATGGCTTTCAACATTCAATTCCTCTAATTCTGCTACTGCTTTCTCTTCATGGGATGCAACCCACAAAAATCCATGCAGATGGGATTATATAACATGTTCTAAAGAAGGGTATGTTTCAGAGATCATCATAACATCCATTGATCTTCACATAAGCTTCCCTACACAGCTCCTTTCTTTTGGCCACCTAACTACTCTAATCATCTCAAATGCAAATCTCACTGGTGAGATTCGTAGTTCAGTGGGAAACTTGTCATCTCTGGTCACTTTAGACCTCAGCTTCAATGCTTTATCAGGAACCATTCCAGCTGAAATAGGAAAGCTATCTAAACTGCAGCGATTATCTTTGAATTCAAATTCCTTACATGGTGGAATTCCAACCCAAATTGGAAATTGTTCAAAGCTTCAGCAACTTGAACTGTTTGATAATCAGCTCTCAGGCATGATTCCTGGAGAAATAGGCCAGTTGAGGGATCTTGAAACACTTCGAGCAGGTGGGAACCCGGGTATTCATGGTGAAATCCCAATGCAGATATCAAACTGCAAGGCTTTAGTTTATCTAGGCCTTGCAGATACTGGGATATCAGGGGAGATTCCACCAAGTATAGGAGAACTTACAAATCTCAATACACTTCAAATCTACACTGCACATCTCACAGGTCACATCCCACCAGAGATTCATAACTGCTCAGCCTTGGAGAATTTGTTTCTTTATGATAACCAGCTTTCTGGAAATATTCCTCATGAATTGGGTTACATGAAAAGCCTTAGGAGGTTGTTGTTGTGGCAGAATAATTTAACTGGAACAATTCCAGAAAGTCTTGGAAACTGCACAAATCTGAAGGTTATGGACTTCTCTTTGAATTCTCTGGGTGGGGAACTCCCTGTGACTCTCAGAAGTCTAATCTCATTGGAGGAGCTACTTTTGTCTAATAATCACATTTCTGGAGAAATACCTTCCTATATTGGCAATTTCACAAGTCTAAAGCAACTTGAATTGGATAACAACAGGTTCTCTGGGGAGCTTCCACCTGTCCTGGGGCAGCTTAAAGAACTCACCTTGTTCTTTGCCTGGAAGAATCAGCTCCAAGGAAGTATTCCAATAGAACTCTCCAATTGTGAGAAACTTCAATCAATTGATCTTTCACATAATTTCCTCACCGGGTCAATTCCCAATTTGCTGCTTCGTCTGGAAAATTTAACTCAGTTATTGTTGTTATCAAATAGCCTTTCAGGTCAAATTCCTCCAGATATTGGCAGCTGCACCAGCTTGATCAGGTTACGATTGGGATCTAACAAATTTACTGGTCAAATTCCACCAGAAATAGGCCTTTTGAGAAGTTTGAGCTTTCTTGAATTGTCAGATAATCTACTCAGTGGAGATATACCCCATGAGATAGGAAACTGTTCAAAGCTTGAGATGCTTGACTTGCACAGCAATGAACTGCAAGGAACAATTCCTTCCTCATTAGAATTCCTGGTTGATCTTAATGTCTTAGATATTTCTACAAACAGAATAACTGGCAGCATTCCTGAAAATTTGGGCAAGCTTACATCATTAAATAAGTTGATGCTCAGTGGAAACCAGATCACTGGTTTGATCCCTCAGTCACTGGGCCTTTGTAAGGGTTTGCAGTGGCTGGATGTAAGCAAAAATAGAATATCTGGTTCTATTCCTGATGAGATTGGACACTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTTTTTAACAGGCCCCATCCCAGAAACCTTCTCAAGTCTCTCAAAACTTTCCAACTTGGACCTCTCTCACAACAAGCTTAGAGGGAGCCTCAAAGTACTGGGTAGTCTTGACAATCTAGTGTCTCTAAATGTCTCCTACAATAGTTTTTCTGGTTCAATTCCTGATACAAAGTTCTTCCGGGATCTCCCTCCTGCTGCATTTGCTGGCAACCCTGACCTATGTATTAACAAGTGTCAAGTAAGTGGATATAGCCAAGGCATCAAGTCAATCAGAAATATTATTATCTACACTTTCCTTGGTGTTATTTTAACTTCAGTGTTTGCAACTTTTGGAGTGATTTTAGCTCTTAGAATTCAAGGGGGCACTTTCGGGAGGAATTTTGATAGTGAAATGCAATGGGATTTTACTCCATTTCAAAAGCTCAACTTCTCCATCAATGACATTGTCACAAAGTTATCAGATTCAAACATTGTGGGAAAGGGTTGCTCAGGAATTGTTTACCGTGTAGAGACTCCAATGAAACAAGTTATTGCAGTGAAGAAACTATGGCCACAAAAGAATGAAGGGCCACCAGAGCGAGATTTCTTTTCTGCAGAAGTTCATACCCTTGGATCAATTAGGCATAAAAATATAGTGAGACTTTTAGGATGCTACAACAATGGAAGAACCAGGTTGCTCTTGTTTGACTATATATGTAATGGGAGTTTGTCAAGATTGCTCCATGAAAATAGATTGTTCTTGGATTGGGATGCAAGATATAAGATCATAATGGGAGCAGCTCATGGTTTAGAGTATCTTCATCATGATTGTATCCCTCCAATTATCCATCGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATATGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTAGGTTCCGCAGAGTGTTCAGGAGCCTCTGCTATCATTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTATATAGCTATGGTGTGGTGCTCATTGAGGTCTTAACAGGGATGGAGCCAACTGATAACAGGATTCCAGAGGGTTCGCACATTGTTACTTGGGTTATCAGGGAAATCAGAGAGAAGAAGAGAGAATTCACATCAATTCTTGACCAGCAACTAGTGTTGCAGTGTGGAACAAGAATCCCAGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGCGTGAATCCATCCCCAGAAGAAAGACCTTCGATGAAAGATGTAACTGCAATGCTCAAGGAGATCAGGCATGAAAATGTGGAATTTGACAAATCAAATTTTCTCCATAAAGGAGTTGTCACCAATCCAAAAACAGCAGTACAATTTTCCAGCTTCTCCAAATCATGTGAACCTCAAGTTGAATCACCATCTTCTTCATAG 3252 0.4034 MSSNALTIFILFLNISLFPATSALNREGLSLLSWLSTFNSSNSATAFSSWDATHKNPCRWDYITCSKEGYVSEIIITSIDLHISFPTQLLSFGHLTTLIISNANLTGEIRSSVGNLSSLVTLDLSFNALSGTIPAEIGKLSKLQRLSLNSNSLHGGIPTQIGNCSKLQQLELFDNQLSGMIPGEIGQLRDLETLRAGGNPGIHGEIPMQISNCKALVYLGLADTGISGEIPPSIGELTNLNTLQIYTAHLTGHIPPEIHNCSALENLFLYDNQLSGNIPHELGYMKSLRRLLLWQNNLTGTIPESLGNCTNLKVMDFSLNSLGGELPVTLRSLISLEELLLSNNHISGEIPSYIGNFTSLKQLELDNNRFSGELPPVLGQLKELTLFFAWKNQLQGSIPIELSNCEKLQSIDLSHNFLTGSIPNLLLRLENLTQLLLLSNSLSGQIPPDIGSCTSLIRLRLGSNKFTGQIPPEIGLLRSLSFLELSDNLLSGDIPHEIGNCSKLEMLDLHSNELQGTIPSSLEFLVDLNVLDISTNRITGSIPENLGKLTSLNKLMLSGNQITGLIPQSLGLCKGLQWLDVSKNRISGSIPDEIGHLQGLDILLNLSWNFLTGPIPETFSSLSKLSNLDLSHNKLRGSLKVLGSLDNLVSLNVSYNSFSGSIPDTKFFRDLPPAAFAGNPDLCINKCQVSGYSQGIKSIRNIIIYTFLGVILTSVFATFGVILALRIQGGTFGRNFDSEMQWDFTPFQKLNFSINDIVTKLSDSNIVGKGCSGIVYRVETPMKQVIAVKKLWPQKNEGPPERDFFSAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSRLLHENRLFLDWDARYKIIMGAAHGLEYLHHDCIPPIIHRDIKANNILVGPQYEAFLADFGLAKLVGSAECSGASAIIAGSYGYIAPEYGYSLRITEKSDVYSYGVVLIEVLTGMEPTDNRIPEGSHIVTWVIREIREKKREFTSILDQQLVLQCGTRIPEMLQVLGVALLCVNPSPEERPSMKDVTAMLKEIRHENVEFDKSNFLHKGVVTNPKTAVQFSSFSKSCEPQVESPSSS* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02424 1083 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Rops9g02424 1083 SUPERFAMILY L domain-like 71 462 - -
Rops9g02424 1083 Gene3D Phosphorylase Kinase; domain 1 745 839 - -
Rops9g02424 1083 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Rops9g02424 1083 Pfam Leucine Rich Repeat 407 427 IPR001611 GO:0005515
Rops9g02424 1083 Pfam Leucine Rich Repeat 604 622 IPR001611 GO:0005515
Rops9g02424 1083 Gene3D Ribonuclease Inhibitor 386 691 IPR032675 -
Rops9g02424 1083 SMART LRR_typ_2 333 356 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 645 678 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 549 572 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 116 139 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 477 501 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 140 164 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 357 381 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 622 644 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 285 309 IPR003591 -
Rops9g02424 1083 SMART LRR_typ_2 429 453 IPR003591 -
Rops9g02424 1083 Gene3D Ribonuclease Inhibitor 185 385 IPR032675 -
Rops9g02424 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 737 839 - -
Rops9g02424 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 883 895 IPR008271 GO:0004672|GO:0006468
Rops9g02424 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
Rops9g02424 1083 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Rops9g02424 1083 SUPERFAMILY RNI-like 350 664 - -
Rops9g02424 1083 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Rops9g02424 1083 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Rops9g02424 1083 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Rops9g02424 1083 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Rops9g02424 1083 ProSiteProfiles Protein kinase domain profile. 761 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02424 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Rops9g02424 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Rops9g02424 1083 ProSitePatterns Protein kinases ATP-binding region signature. 767 790 IPR017441 GO:0005524
Rops9g02424 1083 SMART serkin_6 761 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02424 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 840 1054 - -
Rops9g02424 1083 Gene3D Transferase(Phosphotransferase) domain 1 840 1058 - -
Rops9g02424 1083 SMART LRR_sd22_2 525 548 - -
Rops9g02424 1083 SMART LRR_sd22_2 622 647 - -
Rops9g02424 1083 SMART LRR_sd22_2 501 524 - -
Rops9g02424 1083 SMART LRR_sd22_2 140 166 - -
Rops9g02424 1083 SMART LRR_sd22_2 405 434 - -
Rops9g02424 1083 SMART LRR_sd22_2 261 280 - -
Rops9g02424 1083 SMART LRR_sd22_2 116 131 - -
Rops9g02424 1083 PRINTS Leucine-rich repeat signature 119 132 - -
Rops9g02424 1083 PRINTS Leucine-rich repeat signature 622 635 - -
Rops9g02424 1083 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 385 1037 - -
Rops9g02424 1083 SUPERFAMILY Protein kinase-like (PK-like) 740 1041 IPR011009 -
Rops9g02424 1083 Pfam Protein kinase domain 764 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02424 Rops-Chr9 44986206 44989753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02424 23 1055 Receptor kinase-like Gene Family AT5G56040 48.473 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops9g02424 Pkinase 7.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02424 - - gmx:100814382 1804.65