Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02416 ATGGAACAGAGCATCCTATGCAAATACACTGTGCATCAAAATGTCACCAAGAAGTTCAAGAAACAGAAGAAACTCTCCGACAACAACAGTTTCATTGAGCCAAGAGTGGTTCGCATATCCGTCACTGATCCAGACGCCACCGACTCTTCCAGTGACGAAGAAAGAGATAGCTTCCCTCGCCAGAGAGTGAAGCGATATATTAACCAGATTGACATCGAACCAGCCTGCAAAACCGTTCCTTCCGCCCCTAAAAAGAGGCCCGCCGGAGAAACCTCTACTTGCCGGCGGCCGGCAAAGCCTACCGCCGGCGGAGGAAATATCAAAAAGTTCCGCGGCGTGCGGCAGAGACCATGGGGAAAATGGGCGGCGGAGATTCGAGATCCCAATAGTCGGGTCCGTCTCTGGCTTGGCACCTTCAACACCGCCGAGGAAGCAGCCATGATGTACGACAGTGCCGCTATTAGGCTCCGCGGTCCAGATGCTCAAACAAACTTTGTTACTCCGCCGGCGAGGGAGAAGCCAGAGGAAACAGAAGCCATTAACGGAAAACCAGAAATGAACGTGATAGTGAAACCAGAGGCGTCTGGGTCTGGCTATGATTCTGGTGAGGAATGTCTCAATCTCTCTTCACCTACTTCAGTTCTTCAATTCAGACGGGAGGAAATTGGTGAACCACAAAAACCAATAGAATCAGAGGAAGTTTCTGTATCAGTTGATACTGAACCAGTGGTGACTGAAGAGGTTTTTGAAGAGTGTCAAGGGGAAACAAGGTTGTTTCACGAGATCAGTGAGTTTGAAATGCCTTCGTGGGATGATGTGTTTAATTTTCCAACTACACCAGAATACTCCATTATGTTTGATGAGCCTGCTTCTCATTGGTTGGATGAAACGACACCGGTTTTTGTTAATGACGATTTCAGTGATTGCATAAATTTTGATAAAACGTATTCACCATCGAATTTGTGCCAAGTGGACGATTACTTTCAGGACATTTTGTTAGGCTCAGATCCTCTGGTGGTGCTGTGA 1026 0.4756 MEQSILCKYTVHQNVTKKFKKQKKLSDNNSFIEPRVVRISVTDPDATDSSSDEERDSFPRQRVKRYINQIDIEPACKTVPSAPKKRPAGETSTCRRPAKPTAGGGNIKKFRGVRQRPWGKWAAEIRDPNSRVRLWLGTFNTAEEAAMMYDSAAIRLRGPDAQTNFVTPPAREKPEETEAINGKPEMNVIVKPEASGSGYDSGEECLNLSSPTSVLQFRREEIGEPQKPIESEEVSVSVDTEPVVTEEVFEECQGETRLFHEISEFEMPSWDDVFNFPTTPEYSIMFDEPASHWLDETTPVFVNDDFSDCINFDKTYSPSNLCQVDDYFQDILLGSDPLVVL* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02416 341 MobiDBLite consensus disorder prediction 38 61 - -
Rops9g02416 341 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Rops9g02416 341 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Rops9g02416 341 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Rops9g02416 341 CDD AP2 108 165 IPR001471 GO:0003700|GO:0006355
Rops9g02416 341 MobiDBLite consensus disorder prediction 78 109 - -
Rops9g02416 341 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Rops9g02416 341 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Rops9g02416 341 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Rops9g02416 341 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Rops9g02416 341 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 242 - -
Rops9g02416 341 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02416 Rops-Chr9 44807858 44809717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02416 7 340 AP2-EREBP Transcription Factor Family AT4G27950 40.341 5.44e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops9g02416 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02416 - - pcin:129303306 367.081