Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02405 ATGGAAATGCCCAAGGTTCCATTGGATGAAAGCTTATCTGATATTTTCCAAGATACAAAGTTTGGGGACACCTATTTTGGTGGAGACGATCTCTTTGCCATTTTAGAGAGACTAGAAGACTTCAACGATTTTCCTCCCATCAATGAAGCTGTTATTATTAGCCCAACTTCAAAAGAAAATGAGCAAAACTCAAGATTGGTGTCACAGAAGTTGTCAACAATATCTTCAAGTGCTCCACAAGATTCTGAAACTGAGCCTGAAACCTCACCAAGAAGCAAGAGACAAAAGCTTGCCACCCCGACTTCACTAAAGGAACCAAACCCTGATGGACAGCATAGGATTTCTCATATTACTGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGCACTTGTCCGTCTTGAGGTCACTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAATGAGTTGCAGCAGGTGCTACAATGCCTGGAGGCCAAGAAACACAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCCCAAGACCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCCAGAATAATGAACTTGCCCATTAGTCCAAGAACTCCACAACCAGGTAGCCCTTACAAGCCAAGGTTGCCACAAGGATACCTTTCCCCTACCACCATATCCAACTCTGTTGAGCCTTCTCCTACATCTTCCTCTTCTTCCATCAATGATAATATCAACGAGCTTGTTGCAAATTCCAAGTCTGCTATCGCAGATGTGGAGGTCAAGTTTTCAGGTCCACATGTTCTCTTGAAAACTGTGTCACCACGAATTCCAGGGCAGGCTCTAAGAATAATATCAGCCCTTGAAGACCTAGCTCTTGAGATCCTCCATGTGAGCATTAGCACAGCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1038 0.4316 MEMPKVPLDESLSDIFQDTKFGDTYFGGDDLFAILERLEDFNDFPPINEAVIISPTSKENEQNSRLVSQKLSTISSSAPQDSETEPETSPRSKRQKLATPTSLKEPNPDGQHRISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIEGVVDYINELQQVLQCLEAKKHRKVYSDVLSPRLVSSPRPSPLSPRKPPLSPRIMNLPISPRTPQPGSPYKPRLPQGYLSPTTISNSVEPSPTSSSSSINDNINELVANSKSAIADVEVKFSGPHVLLKTVSPRIPGQALRIISALEDLALEILHVSISTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02405 345 CDD bHLH_AtFAMA_like 114 185 - -
Rops9g02405 345 SMART finulus 117 168 IPR011598 GO:0046983
Rops9g02405 345 MobiDBLite consensus disorder prediction 55 85 - -
Rops9g02405 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 182 IPR036638 GO:0046983
Rops9g02405 345 MobiDBLite consensus disorder prediction 190 207 - -
Rops9g02405 345 FunFam Transcription factor SPEECHLESS 103 177 - -
Rops9g02405 345 Gene3D - 104 176 IPR036638 GO:0046983
Rops9g02405 345 MobiDBLite consensus disorder prediction 230 252 - -
Rops9g02405 345 MobiDBLite consensus disorder prediction 55 114 - -
Rops9g02405 345 MobiDBLite consensus disorder prediction 184 252 - -
Rops9g02405 345 MobiDBLite consensus disorder prediction 93 108 - -
Rops9g02405 345 Pfam Helix-loop-helix DNA-binding domain 113 163 IPR011598 GO:0046983
Rops9g02405 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 162 IPR011598 GO:0046983
Rops9g02405 345 PANTHER TRANSCRIPTION FACTOR FAMA 13 344 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02405 Rops-Chr9 44484996 44488322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02405 8 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 49.451 7.15e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g02405 HLH 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02405 K20558 - gmx:100809717 458.373