Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02404 ATGGGAGATTGGGATCACAACAACCTCCTACAAGAGCTACTACAAGGCATAGAGTTTGCAAGGCAGCTGCAATTCTCTCTCCACGTGCCTTCTTCATCCCAAGAAAGCCGCGAGCTTCTAATCCAGAAGATCATAGCAGCATTTGAAAAGGCCCTTAAATTGGTGCACTTGAAAGTTGGGCTAGTGGGTGAGCCTTCACAAATGCACTCAAGGGTTTTAATCCGAAGGTCAAAGTCGTCATCTTTGAGTGAATGTCCTCGCAGTGAAGACTCAGATTTAGATCTGAGGGACCTGGAGCTGAGTGCCTCTAGAAAGAGGAAAGCTATACCAAGATGGACAAAAAAGATTCAAATTAACCCATGGATGGAAGTTGAAGGGTCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAGCTAAGTATCCAAGAGGCTATTACAGATGCAACCACAGAAACGGTCAAAGTTGCATGGCCACAAAGCAAGTTCAAAGATCAGATGAAGACGTAACTGTCTTTGAGATCAATTACAGGGGAGAGCACACCTGCACAATGGCCTCTTATGTGGTTCCTTCATTAGAACCACAAAAAAACCAAGAACCAAACTTGAGCGAAAGTCCACAGCAGCAAAGTGACCAACATAATCTTGTGCAGCTATCAAGTGATCAACTTTTGAACCTCTGTGCAGGCATGAGAATCCTAACAGGGAACCTAGATGATGCCCCTAACCAGTCCTTTCCTTCATTTCAGTTTCCTTTAACTTCAGAAGTAAAAACTGAGGAACAGGCTTTCCCTTCTCAAATTATTGAGAACAACTTTGCAGAAAAAAATAGCTATCCTTCATATGTGTCTCCTACTGCCACATCTAGAACAAACTTTTTGTCTCCAAATGGGGAGGACAGCTTTAAGGGGAACCCAAATATGGAAAGTTCTGGGTTTGAGATCAATGACATGATCTCAGTTACAAACGCTCCAACCGTTGGCATAGAGTTTCCATTTGATCACTTTCAATTAGATTGCCAAAGCTTCACCTTTTATAACTCACGATTCTCCTAA 1071 0.4248 MGDWDHNNLLQELLQGIEFARQLQFSLHVPSSSQESRELLIQKIIAAFEKALKLVHLKVGLVGEPSQMHSRVLIRRSKSSSLSECPRSEDSDLDLRDLELSASRKRKAIPRWTKKIQINPWMEVEGSLDDGYSWRKYGQKDILGAKYPRGYYRCNHRNGQSCMATKQVQRSDEDVTVFEINYRGEHTCTMASYVVPSLEPQKNQEPNLSESPQQQSDQHNLVQLSSDQLLNLCAGMRILTGNLDDAPNQSFPSFQFPLTSEVKTEEQAFPSQIIENNFAEKNSYPSYVSPTATSRTNFLSPNGEDSFKGNPNMESSGFEINDMISVTNAPTVGIEFPFDHFQLDCQSFTFYNSRFS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02404 356 SUPERFAMILY WRKY DNA-binding domain 126 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g02404 356 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g02404 356 ProSiteProfiles WRKY domain profile. 123 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g02404 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 304 IPR044810 GO:0003700
Rops9g02404 356 Gene3D WRKY domain 116 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g02404 356 MobiDBLite consensus disorder prediction 199 219 - -
Rops9g02404 356 FunFam WRKY transcription factor 53 114 191 - -
Rops9g02404 356 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02404 Rops-Chr9 44451473 44452840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02404 1 259 WRKY Transcription Factor Family AT4G23810 36.585 1.85e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g02404 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02404 - - ccaj:109795434 357.451