Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02389 ATGGCAAAGAAGAAGGAGAAGCACGTTAACGTCTCCGGCAGACCCGTCCGCGACACTAAGGACAAGATCTTAAGTCACGAGTTTCAATCCAAGGATCTTCCCTCCACGAGAATCCAACCTGACCGTCGCTGGTTCGGAAACACTTGTGTTGTGAATCAGAAAGAGCTTGGGGAAGAAGTTAAACTGCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACGGTTGTTGAAGAGGACACCTTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCGTTATTGGGGAAGTTTAGAGCTTTCCCTGAGGCTGTCATAAGAACTTACACGAAGCGGTTACTGCTTGGACTTGAGAACTTGCACAAAAATGGGATCATGCACAGAGATATTAAGGGAGCCAATATTCTTGTAGATAACAAAGGGTGCATAAAACTTGCAGATTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCTACCATTTCCGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGTTTCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAGCAATACCAGCAAGAGGTTGCTGCTCTCTTCCATAGGGACAACTAA 684 0.4591 MAKKKEKHVNVSGRPVRDTKDKILSHEFQSKDLPSTRIQPDRRWFGNTCVVNQKELGEEVKLLKDLSHPNIVRYLGTVVEEDTLNILLEFVPGGSISSLLGKFRAFPEAVIRTYTKRLLLGLENLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHRDN* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02389 227 SUPERFAMILY Protein kinase-like (PK-like) 54 220 IPR011009 -
Rops9g02389 227 Pfam Protein kinase domain 53 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02389 227 Gene3D Transferase(Phosphotransferase) domain 1 42 227 - -
Rops9g02389 227 ProSiteProfiles Protein kinase domain profile. 1 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02389 227 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 54 224 - -
Rops9g02389 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Rops9g02389 227 SMART serkin_6 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02389 227 Pfam NGP1NT (NUC091) domain 12 57 IPR012971 -
Rops9g02389 227 CDD STKc_MAPKKK 54 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02389 Rops-Chr9 44073913 44074596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02389 54 224 MAP Kinase Kinase Kinase AT1G54960 85.965 1.44e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops9g02389 Pkinase 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02389 K20606 - gmx:100779001 331.643