Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02388 ATGAGTACTACTCAGCAAGAGAAGTGTGTTAGGTTTCAGGATTGGAATTCTGAGAAGGTTTCTGAGAGCAATTATCCTGCAATTAACATAACAAACTCAGGGAGATTTAGAACTAAAATAAGTTCGTTTTCCGAGAAGTTTCAGAGGGGATTGGAATCTGGTTCTGAGAGGATAAAGAGATTCAGGACAACATTCGAATCTTTTTCCTATAACAGTGCTCTTTCTAGAAGCTTCAGTTCTAAAAGGAAAATCCTTGATCCACAGGGTCCATTCCTTCATAAGTGGAACAAGATATTTGTATTATTATGTGTTATTGCAGTATCACTGGATCCTTTGTTCCTTTATGTCCCTGTGATTGATGATAAGAAGAAATGTCTTTCACTGGACAGCAGGATGGAAATTACAGCAACTGTTTTAAGAACTTTTTCTGATGTCTTTTATATAATCCACATGTTTTTCCAGTTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTGTTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTGTCAACATATTTTTTAGTTGACATTCTTGCCATTCTTCCCCTCCCACAGGTGGTAATTCTAATTATCATTCCGAAGATGAGTGGCTTTAAATCACTTAATACAAAGAACTTGCTGAAATTTGTGGTCTTCTTCCAGTATGTGCCTCGCTTATTTCGAATAGTTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACCGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTCTTTGGTGCCTTTTGGTACCTGTTTTCAATTGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCAAAGTAATACAATGTGTAACAAGGCAGATATGTATTGTAATGATCAATGGATTGGGTTGAGTGCAATTTCAAATTTCCTGAATACTTCTTGCCCAATAAAGGAGGAAGATAAAAAGCTCTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCCAAAAAATTCTTTTACTGTTTTTGGTGGGGCCTGAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCGATGTTTGGGAAATCTGTTTTGCAGTTTTTATTTCCATAGCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACAACAAGATTAGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTGCTTCCTGACAGCCTGAGAGAGCGAATCAGACGATATGAACAGTACAAATGGCAAGAAACCAGAGGTGTAGATGAAGACAATTTGATTCATGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTATGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTTTGGATGCAATGTGTGACCGTCTCAAGCCAGTCCTTTACACAGAAGAAAGCTACGTTGTCCGCGAAGGAGACCCCGTTGACGAGATGCTTTTCATAATGCGAGGCAAGCTATTGACCGTGACCACCAATGGTGGAAGAACCGGCTTCTTCAACTCCGAGTACCTCAAGGCCGGTGACTTTTGTGGAGAGGAGCTTCTGACATGGGCTTTAGACCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAAACCCTTTCAGAAGTTGAAGCCTTCGCACTAAAAGCCGATGATCTGAAGTTTGTGGCATCTCAGTTCCGGCGCCTTCACAGCAAGCAGCTGCGCCACACTTTCAGGTTCTACTCGCAGCAATGGCGCACGTGGGCCGCGTGTTTCATACAGGCAGCCTGGCGGCGTTACAGCAAGAGGAAGCTTGAAGAGTCTCTGGTTGAAGAGGAGAACAGGCTGCAAAATGCATTGGCAAAGGCAGGTGGTAGCTCACCAAGCCTAGGTGCAACCATATATGCTTCCAGGTTTGCTGCTAATGCACTTAGATTATTGCGCCGTAGTGGCACCAGGAAGACAAGGGTGCCGGAGAGAATACCCCCTATGTTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCTGAAGAGCAGTAG 2154 0.4253 MSTTQQEKCVRFQDWNSEKVSESNYPAINITNSGRFRTKISSFSEKFQRGLESGSERIKRFRTTFESFSYNSALSRSFSSKRKILDPQGPFLHKWNKIFVLLCVIAVSLDPLFLYVPVIDDKKKCLSLDSRMEITATVLRTFSDVFYIIHMFFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSTYFLVDILAILPLPQVVILIIIPKMSGFKSLNTKNLLKFVVFFQYVPRLFRIVPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETTCWQEACQSNTMCNKADMYCNDQWIGLSAISNFLNTSCPIKEEDKKLFDFGIFLDALQSGVVESRDFPKKFFYCFWWGLKNLSSLGQNLATSTDVWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEDNLIHDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYVVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLVEEENRLQNALAKAGGSSPSLGATIYASRFAANALRLLRRSGTRKTRVPERIPPMLLQKPAEPDFTAEEQ* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02388 717 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Rops9g02388 717 Coils Coil 640 660 - -
Rops9g02388 717 CDD CAP_ED 488 619 IPR000595 -
Rops9g02388 717 Gene3D Helix hairpin bin 414 479 - -
Rops9g02388 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 712 - -
Rops9g02388 717 SUPERFAMILY Voltage-gated potassium channels 86 410 - -
Rops9g02388 717 Pfam Ion transport protein 95 415 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops9g02388 717 Pfam Cyclic nucleotide-binding domain 508 599 IPR000595 -
Rops9g02388 717 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
Rops9g02388 717 SMART cnmp_10 488 619 IPR000595 -
Rops9g02388 717 Gene3D - 95 412 - -
Rops9g02388 717 SUPERFAMILY cAMP-binding domain-like 417 610 IPR018490 -
Rops9g02388 717 Gene3D Jelly Rolls 486 606 IPR014710 -
Rops9g02388 717 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02388 Rops-Chr9 44039805 44048910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02388 5 716 Ion Channels AT5G53130 78.492 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02388 K05391 - gmx:100801032 1283.86