Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02346 ATGCCGAGTCTGAAACGGCGCAGACTCGGTGAGTCAGAGGAGGACGAGTTCGCCGCGGCGACGAAGAGGAAGAGGAAGAGAAAGATAAACGGGAACTACCCGTTGAACCTCCTCGGCGGCGTAATTCCCACTAGCATTCGTGGGTTACTCGGTGCCACGGCGGCAACCGTGGCACCAGAGAAGGACTTCCCCTCGCCACGTGGCGGAGGAGCCGACAAGAAAAACATGCCGAGGCCGCCGTTGGTTCGGACCTCGCGCGGCCGCGTTCAGGTGCTGCCGTCGCGGTTCAATGATTCGGTTATCGATGATTGGAGAAAAGATAGCAAGGGCACAACTGGTGTAGATGAATTGGATGAAGAGTTCAATTTCAGGGCACCAAAACCTTGCAGTGGAAAAGGGAAGAACGGTGAAAGAATAAGCCACAAGTCTCGTGGTTATTCAATTTTGTGTGAGGAGGTTTTGCATAAGAATTTCGATGCTGCGAGCAAGGGGATGAGTTTGCGTGAGGTGTTTGAGGATTTGAAGGGCAATGAGGGAGTTTTGAAGGAGAAGAAAGATGGATTGTATGGACCTGAAGATTTTTATGCTGGTGATATAGTGTGGGCCAAAGCAAGGAAGAAGGAACCTTTTTGGCCTGCCATTGTTCTTGATCCTATGTCTCAAGCACCTGAGCTGGTATTGAGGTCTTGCATAGCTGACGCTGCTTGTGTGATGTTTCTTGGGTACTCTGGGAATGAAAATCATAGGGACTATGCATGGGTGAAGTATGGAATGATTTTTCCATTTGTGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAATTGAGTTACTGTAATCCCTCTGAATTTCAAACGGCGATGGAGGAGGCATTTTTGGCAGATCAGGGCTTTATAGAGAAGTTGATGGCAGAGATAAATACAGCAGCTGGTAACAATGGTTACAGTGATTCTGTTCTCAAAGCCTTTCAGGAGCTCACTGGTTCAAATCAGAATGGAGAATGTCAGCAGGATTTATTTAATAAGAAGAAAGACACACAACCTTGTGAAGTATGTGGATTGGACCTTCCTTTCAAAATGTCAAAGAAAACAAAAGATTTGACTCCTGGTGGCCAACTCCTATGTAAAACATGTGCCAGGTTAACAAAATCTAAACATTATTGTGGCATATGTAAGAAAATTTGGAATCATTCGGACAGCGGAAGCTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCCAGCAACCTTTTCAAGAATCTTGGAGGCACGGATTATTTCTGCCCTACTTGCAAAGTGAAGTTTAATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGCACAAAAACAGTGGGCAGCTAGTGCTTCCAAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGAGACTGAAAAGCGGGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAATTGGAGAACAAGTATTCGGATTAAAGGATCCATGCTATCACTGGAACAATGGATGCTGCAATTGGCAGAGTTTCATGCTAATGCCGAAGTTTCTGTCAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAACAGAAGTTGCTTACCTTTCTGCAAGAGAAGTATGAACCTGTATGTGCTAAGTGGACCACAGAACGATGTGCTGTGTGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCGGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCACTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAGATTCTTTTGTGAAGATTTGTGTCATCTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGCATGGAGTTGCATTGTTTGGAGAAAAATGGTAAACAGACCACAAAAATGGTTTCTTATTGTTCTTACCACAGGACTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGGTCAAGGTTAATTTCATCTAACAGAATAAAAGTAGAAGACACTCCTCCTGCAGATAACGCTGTACATGATCCATTTTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAACCATACAAAAAAGAGAGCAGCAGATGAAGCCATTGCTCATAAAGTGAGGGGTCACTTCCGTCATCCTTTAGATGCAATACAGAGTTTAAATGCATGCAAAGTAGTAGATGAACCTCAGGCATTTTCTTCTTTCGGGGAACGTCTAAACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATCCATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAAACAGTGAGGCGCAGCATTGCAGATCTAAGGGAGGCACGCTATAGATCAGAAGGGAAAGATTGCTATCTGTTCAAGATTAGTGAAGAAGTGGTAGTTGATGCCACTGATAAAGGAAATATAGCGCGGCTAATTAACCATTCTTGCATGCCAAATTGCTTTGCAAGGATAATGAGTGTTGGTGATGACGAGAGCCGGATTACCCTCATTGCTAAGACTAACGTATCTGCTGGCGAGGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3042 0.4385 MPSLKRRRLGESEEDEFAAATKRKRKRKINGNYPLNLLGGVIPTSIRGLLGATAATVAPEKDFPSPRGGGADKKNMPRPPLVRTSRGRVQVLPSRFNDSVIDDWRKDSKGTTGVDELDEEFNFRAPKPCSGKGKNGERISHKSRGYSILCEEVLHKNFDAASKGMSLREVFEDLKGNEGVLKEKKDGLYGPEDFYAGDIVWAKARKKEPFWPAIVLDPMSQAPELVLRSCIADAACVMFLGYSGNENHRDYAWVKYGMIFPFVDYVDRFQGQSELSYCNPSEFQTAMEEAFLADQGFIEKLMAEINTAAGNNGYSDSVLKAFQELTGSNQNGECQQDLFNKKKDTQPCEVCGLDLPFKMSKKTKDLTPGGQLLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYFCPTCKVKFNFELSDSEKSQPKVKWHKNSGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCETEKRALSEWERHTGSKFRNWRTSIRIKGSMLSLEQWMLQLAEFHANAEVSVKPKKPSLKERKQKLLTFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSDSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCSYHRTPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRIKVEDTPPADNAVHDPFSAARCRIFQRTNHTKKRAADEAIAHKVRGHFRHPLDAIQSLNACKVVDEPQAFSSFGERLNHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGETVRRSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCFARIMSVGDDESRITLIAKTNVSAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02346 1013 CDD PHD_TCF19_like 387 437 - -
Rops9g02346 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 441 IPR013083 -
Rops9g02346 1013 ProSiteProfiles Zinc finger PHD-type profile. 384 440 IPR019787 -
Rops9g02346 1013 ProSiteProfiles PWWP domain profile. 196 265 IPR000313 -
Rops9g02346 1013 CDD PWWP_AtATX3-like 195 297 - -
Rops9g02346 1013 ProSiteProfiles Post-SET domain profile. 997 1013 IPR003616 -
Rops9g02346 1013 Pfam PWWP domain 197 290 IPR000313 -
Rops9g02346 1013 CDD PHD_ATX3_4_5_like 580 626 IPR042011 -
Rops9g02346 1013 Pfam PHD-zinc-finger like domain 634 746 - -
Rops9g02346 1013 MobiDBLite consensus disorder prediction 1 24 - -
Rops9g02346 1013 Pfam PHD-finger 386 439 IPR019787 -
Rops9g02346 1013 ProSitePatterns Zinc finger PHD-type signature. 581 626 IPR019786 -
Rops9g02346 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 749 IPR013083 -
Rops9g02346 1013 ProSiteProfiles Extended PHD (ePHD) domain profile. 632 747 IPR034732 -
Rops9g02346 1013 PANTHER PHD FINGER PROTEINS 73 455 - -
Rops9g02346 1013 SMART set_7 871 994 IPR001214 GO:0005515
Rops9g02346 1013 MobiDBLite consensus disorder prediction 59 82 - -
Rops9g02346 1013 ProSiteProfiles Zinc finger PHD-type profile. 578 629 IPR019787 -
Rops9g02346 1013 Gene3D SET domain 773 1013 IPR046341 -
Rops9g02346 1013 SUPERFAMILY Tudor/PWWP/MBT 189 295 - -
Rops9g02346 1013 FunFam Histone-lysine N-methyltransferase 568 629 - -
Rops9g02346 1013 SUPERFAMILY FYVE/PHD zinc finger 579 643 IPR011011 -
Rops9g02346 1013 MobiDBLite consensus disorder prediction 1 22 - -
Rops9g02346 1013 SUPERFAMILY FYVE/PHD zinc finger 385 442 IPR011011 -
Rops9g02346 1013 CDD ePHD_ATX3_4_5_like 635 746 IPR041955 -
Rops9g02346 1013 SMART PostSET_3 997 1013 IPR003616 -
Rops9g02346 1013 SMART PHD_3 691 747 IPR001965 -
Rops9g02346 1013 SMART PHD_3 386 438 IPR001965 -
Rops9g02346 1013 SMART PHD_3 580 627 IPR001965 -
Rops9g02346 1013 FunFam Histone-lysine N-methyltransferase 630 749 - -
Rops9g02346 1013 FunFam Histone-lysine N-methyltransferase 845 1013 - -
Rops9g02346 1013 Pfam SET domain 882 987 IPR001214 GO:0005515
Rops9g02346 1013 Pfam PHD-finger 593 627 - -
Rops9g02346 1013 Gene3D - 191 296 - -
Rops9g02346 1013 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 4 1013 IPR025780 -
Rops9g02346 1013 SUPERFAMILY SET domain 864 1010 IPR046341 -
Rops9g02346 1013 ProSiteProfiles SET domain profile. 871 988 IPR001214 GO:0005515
Rops9g02346 1013 CDD SET_SETD1-like 860 1009 - -
Rops9g02346 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 573 629 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02346 Rops-Chr9 43215550 43226779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02346 581 746 C2H2 Transcription Factor Family AT3G14740 34.286 1.32e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops9g02346 zf-HC5HC2H_2 1.5e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02346 - - gmx:100775276 1670.6