Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops9g02346 | ATGCCGAGTCTGAAACGGCGCAGACTCGGTGAGTCAGAGGAGGACGAGTTCGCCGCGGCGACGAAGAGGAAGAGGAAGAGAAAGATAAACGGGAACTACCCGTTGAACCTCCTCGGCGGCGTAATTCCCACTAGCATTCGTGGGTTACTCGGTGCCACGGCGGCAACCGTGGCACCAGAGAAGGACTTCCCCTCGCCACGTGGCGGAGGAGCCGACAAGAAAAACATGCCGAGGCCGCCGTTGGTTCGGACCTCGCGCGGCCGCGTTCAGGTGCTGCCGTCGCGGTTCAATGATTCGGTTATCGATGATTGGAGAAAAGATAGCAAGGGCACAACTGGTGTAGATGAATTGGATGAAGAGTTCAATTTCAGGGCACCAAAACCTTGCAGTGGAAAAGGGAAGAACGGTGAAAGAATAAGCCACAAGTCTCGTGGTTATTCAATTTTGTGTGAGGAGGTTTTGCATAAGAATTTCGATGCTGCGAGCAAGGGGATGAGTTTGCGTGAGGTGTTTGAGGATTTGAAGGGCAATGAGGGAGTTTTGAAGGAGAAGAAAGATGGATTGTATGGACCTGAAGATTTTTATGCTGGTGATATAGTGTGGGCCAAAGCAAGGAAGAAGGAACCTTTTTGGCCTGCCATTGTTCTTGATCCTATGTCTCAAGCACCTGAGCTGGTATTGAGGTCTTGCATAGCTGACGCTGCTTGTGTGATGTTTCTTGGGTACTCTGGGAATGAAAATCATAGGGACTATGCATGGGTGAAGTATGGAATGATTTTTCCATTTGTGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAATTGAGTTACTGTAATCCCTCTGAATTTCAAACGGCGATGGAGGAGGCATTTTTGGCAGATCAGGGCTTTATAGAGAAGTTGATGGCAGAGATAAATACAGCAGCTGGTAACAATGGTTACAGTGATTCTGTTCTCAAAGCCTTTCAGGAGCTCACTGGTTCAAATCAGAATGGAGAATGTCAGCAGGATTTATTTAATAAGAAGAAAGACACACAACCTTGTGAAGTATGTGGATTGGACCTTCCTTTCAAAATGTCAAAGAAAACAAAAGATTTGACTCCTGGTGGCCAACTCCTATGTAAAACATGTGCCAGGTTAACAAAATCTAAACATTATTGTGGCATATGTAAGAAAATTTGGAATCATTCGGACAGCGGAAGCTGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCCGAATGCGACAAAATCTCCAGCAACCTTTTCAAGAATCTTGGAGGCACGGATTATTTCTGCCCTACTTGCAAAGTGAAGTTTAATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGCACAAAAACAGTGGGCAGCTAGTGCTTCCAAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGAGACTGAAAAGCGGGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAATTGGAGAACAAGTATTCGGATTAAAGGATCCATGCTATCACTGGAACAATGGATGCTGCAATTGGCAGAGTTTCATGCTAATGCCGAAGTTTCTGTCAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAACAGAAGTTGCTTACCTTTCTGCAAGAGAAGTATGAACCTGTATGTGCTAAGTGGACCACAGAACGATGTGCTGTGTGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCGGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCACTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAGATTCTTTTGTGAAGATTTGTGTCATCTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGCATGGAGTTGCATTGTTTGGAGAAAAATGGTAAACAGACCACAAAAATGGTTTCTTATTGTTCTTACCACAGGACTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGGTCAAGGTTAATTTCATCTAACAGAATAAAAGTAGAAGACACTCCTCCTGCAGATAACGCTGTACATGATCCATTTTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAACCATACAAAAAAGAGAGCAGCAGATGAAGCCATTGCTCATAAAGTGAGGGGTCACTTCCGTCATCCTTTAGATGCAATACAGAGTTTAAATGCATGCAAAGTAGTAGATGAACCTCAGGCATTTTCTTCTTTCGGGGAACGTCTAAACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATCCATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAAACAGTGAGGCGCAGCATTGCAGATCTAAGGGAGGCACGCTATAGATCAGAAGGGAAAGATTGCTATCTGTTCAAGATTAGTGAAGAAGTGGTAGTTGATGCCACTGATAAAGGAAATATAGCGCGGCTAATTAACCATTCTTGCATGCCAAATTGCTTTGCAAGGATAATGAGTGTTGGTGATGACGAGAGCCGGATTACCCTCATTGCTAAGACTAACGTATCTGCTGGCGAGGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG | 3042 | 0.4385 | MPSLKRRRLGESEEDEFAAATKRKRKRKINGNYPLNLLGGVIPTSIRGLLGATAATVAPEKDFPSPRGGGADKKNMPRPPLVRTSRGRVQVLPSRFNDSVIDDWRKDSKGTTGVDELDEEFNFRAPKPCSGKGKNGERISHKSRGYSILCEEVLHKNFDAASKGMSLREVFEDLKGNEGVLKEKKDGLYGPEDFYAGDIVWAKARKKEPFWPAIVLDPMSQAPELVLRSCIADAACVMFLGYSGNENHRDYAWVKYGMIFPFVDYVDRFQGQSELSYCNPSEFQTAMEEAFLADQGFIEKLMAEINTAAGNNGYSDSVLKAFQELTGSNQNGECQQDLFNKKKDTQPCEVCGLDLPFKMSKKTKDLTPGGQLLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYFCPTCKVKFNFELSDSEKSQPKVKWHKNSGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCETEKRALSEWERHTGSKFRNWRTSIRIKGSMLSLEQWMLQLAEFHANAEVSVKPKKPSLKERKQKLLTFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSDSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGKQTTKMVSYCSYHRTPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRIKVEDTPPADNAVHDPFSAARCRIFQRTNHTKKRAADEAIAHKVRGHFRHPLDAIQSLNACKVVDEPQAFSSFGERLNHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGETVRRSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCFARIMSVGDDESRITLIAKTNVSAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* | 1014 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops9g02346 | 1013 | CDD | PHD_TCF19_like | 387 | 437 | - | - | |
Rops9g02346 | 1013 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 381 | 441 | IPR013083 | - | |
Rops9g02346 | 1013 | ProSiteProfiles | Zinc finger PHD-type profile. | 384 | 440 | IPR019787 | - | |
Rops9g02346 | 1013 | ProSiteProfiles | PWWP domain profile. | 196 | 265 | IPR000313 | - | |
Rops9g02346 | 1013 | CDD | PWWP_AtATX3-like | 195 | 297 | - | - | |
Rops9g02346 | 1013 | ProSiteProfiles | Post-SET domain profile. | 997 | 1013 | IPR003616 | - | |
Rops9g02346 | 1013 | Pfam | PWWP domain | 197 | 290 | IPR000313 | - | |
Rops9g02346 | 1013 | CDD | PHD_ATX3_4_5_like | 580 | 626 | IPR042011 | - | |
Rops9g02346 | 1013 | Pfam | PHD-zinc-finger like domain | 634 | 746 | - | - | |
Rops9g02346 | 1013 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Rops9g02346 | 1013 | Pfam | PHD-finger | 386 | 439 | IPR019787 | - | |
Rops9g02346 | 1013 | ProSitePatterns | Zinc finger PHD-type signature. | 581 | 626 | IPR019786 | - | |
Rops9g02346 | 1013 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 630 | 749 | IPR013083 | - | |
Rops9g02346 | 1013 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 632 | 747 | IPR034732 | - | |
Rops9g02346 | 1013 | PANTHER | PHD FINGER PROTEINS | 73 | 455 | - | - | |
Rops9g02346 | 1013 | SMART | set_7 | 871 | 994 | IPR001214 | GO:0005515 | |
Rops9g02346 | 1013 | MobiDBLite | consensus disorder prediction | 59 | 82 | - | - | |
Rops9g02346 | 1013 | ProSiteProfiles | Zinc finger PHD-type profile. | 578 | 629 | IPR019787 | - | |
Rops9g02346 | 1013 | Gene3D | SET domain | 773 | 1013 | IPR046341 | - | |
Rops9g02346 | 1013 | SUPERFAMILY | Tudor/PWWP/MBT | 189 | 295 | - | - | |
Rops9g02346 | 1013 | FunFam | Histone-lysine N-methyltransferase | 568 | 629 | - | - | |
Rops9g02346 | 1013 | SUPERFAMILY | FYVE/PHD zinc finger | 579 | 643 | IPR011011 | - | |
Rops9g02346 | 1013 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Rops9g02346 | 1013 | SUPERFAMILY | FYVE/PHD zinc finger | 385 | 442 | IPR011011 | - | |
Rops9g02346 | 1013 | CDD | ePHD_ATX3_4_5_like | 635 | 746 | IPR041955 | - | |
Rops9g02346 | 1013 | SMART | PostSET_3 | 997 | 1013 | IPR003616 | - | |
Rops9g02346 | 1013 | SMART | PHD_3 | 691 | 747 | IPR001965 | - | |
Rops9g02346 | 1013 | SMART | PHD_3 | 386 | 438 | IPR001965 | - | |
Rops9g02346 | 1013 | SMART | PHD_3 | 580 | 627 | IPR001965 | - | |
Rops9g02346 | 1013 | FunFam | Histone-lysine N-methyltransferase | 630 | 749 | - | - | |
Rops9g02346 | 1013 | FunFam | Histone-lysine N-methyltransferase | 845 | 1013 | - | - | |
Rops9g02346 | 1013 | Pfam | SET domain | 882 | 987 | IPR001214 | GO:0005515 | |
Rops9g02346 | 1013 | Pfam | PHD-finger | 593 | 627 | - | - | |
Rops9g02346 | 1013 | Gene3D | - | 191 | 296 | - | - | |
Rops9g02346 | 1013 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 4 | 1013 | IPR025780 | - | |
Rops9g02346 | 1013 | SUPERFAMILY | SET domain | 864 | 1010 | IPR046341 | - | |
Rops9g02346 | 1013 | ProSiteProfiles | SET domain profile. | 871 | 988 | IPR001214 | GO:0005515 | |
Rops9g02346 | 1013 | CDD | SET_SETD1-like | 860 | 1009 | - | - | |
Rops9g02346 | 1013 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 629 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops9g02346 | Rops-Chr9 | 43215550 | 43226779 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops9g02346 | 581 | 746 | C2H2 Transcription Factor Family | AT3G14740 | 34.286 | 1.32e-19 | 89.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Rops9g02346 | zf-HC5HC2H_2 | 1.5e-27 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops9g02346 | - | - | gmx:100775276 | 1670.6 |