Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02341 ATGGACTTGGCAAGGTGGGAACCCTCTGACCCAGGTGGTTCCTCTCGTCGTTCCACTACTCTAACCAAATCAACCACTTCCACTTCCTCAGGGAGTAAAAAGAAGCTCATCATGCTCTCCCTCCTCGCCGCTGTATTAATTGTTGCCTCCGCCGTCTCCGCCGCACTTGTCACCGTTATCCGCTCTCGTGCTTCGTCGGGGAACCGGAATGCTCCGAACCTCCGCGGCAAACCAACCGAGGCAATCTCCCGAACCTGCAGCAAGACACGTTTCCCCACTTTATGTATCAATTCCCTCCTTGACTTCCCTGGCTCCACCACTGCTTCCGAGCAAGAACTAGTTCACATCTCTTTCAACATGACCCTGCGCCACCTTAACAGAGCATTCTACGCTTCCTCCGGCCTCTCTTTCACAGCCACAGACCCGCGAGTCCGCGCCGCTTATGAGGATTGCCTCGAGCTTCTTGATGAGTCCATGGATGCGCTCGCACGGTCTTTAACCTCCGTCACGCCGCCCTCGGCATCAACCCGCGATGAGATTTCCCCGTCCGCCACGGGATCCACCGAGGACGTGCTGACGTGGCTAAGTGCCGCGCTTACTAACCAGGACACTTGCGCTGAGGGCTTTGAGGACACTAACGGGAGCCTCAAGGATCAGATGGTTAATAATTTGAAGGATTTGTCGGAACTCGTGAGTAACTGTCTCGCGATATTCTCGGCGAGTGGAAGTGGTGATTTCTCAGGGGTACCCATACAGAACAGAAGACGATTAATGGGAACGGGAAAGGAAGATAATGTTATCGGCGATATCTCGGGGAAATTTCCCAAATGGTTGAATAAACGAGATAGGAGATTGTTGAGTTTACCCGTGTCGGCGATACAAGCCGATATAGTTGTCTCAAAGAATGGTAACGGAACGGTGAAGACAATAACAGAAGCAATTAAAAAAGCGCCAGAACATAGTCGCCGGCGGTTCATAATTTACGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGGTGGGGAAAAAGAAAAGGAACATTATGTTCATAGGTGACGGCAAGGGTAAAACTGTCATCACAGGGAGAAAAAATGTTGCAGATGGCATGACCACTTTCCATACCGCATCCTTCGCTGTCGGGCAACGGGTCAAATGGCCCGGGTACCGGGTCATTACTTCCACGGTGGAAGCTGATAGGTTCACGGTGGCCCAATTCATATCTGGCTCCTCATGGTTACCATCTACTGGAGTGGCGTTTATGGCCGGGTTATCCACCTAA 1281 0.5144 MDLARWEPSDPGGSSRRSTTLTKSTTSTSSGSKKKLIMLSLLAAVLIVASAVSAALVTVIRSRASSGNRNAPNLRGKPTEAISRTCSKTRFPTLCINSLLDFPGSTTASEQELVHISFNMTLRHLNRAFYASSGLSFTATDPRVRAAYEDCLELLDESMDALARSLTSVTPPSASTRDEISPSATGSTEDVLTWLSAALTNQDTCAEGFEDTNGSLKDQMVNNLKDLSELVSNCLAIFSASGSGDFSGVPIQNRRRLMGTGKEDNVIGDISGKFPKWLNKRDRRLLSLPVSAIQADIVVSKNGNGTVKTITEAIKKAPEHSRRRFIIYVRAGRYEENNLKVGKKKRNIMFIGDGKGKTVITGRKNVADGMTTFHTASFAVGQRVKWPGYRVITSTVEADRFTVAQFISGSSWLPSTGVAFMAGLST* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02341 426 CDD PMEI-like_3 86 240 - -
Rops9g02341 426 Gene3D - 290 380 IPR012334 -
Rops9g02341 426 MobiDBLite consensus disorder prediction 12 30 - -
Rops9g02341 426 NCBIfam pectinesterase inhibitor domain 69 238 IPR006501 GO:0004857
Rops9g02341 426 Gene3D - 381 426 IPR012334 -
Rops9g02341 426 Pfam Plant invertase/pectin methylesterase inhibitor 81 237 IPR006501 GO:0004857
Rops9g02341 426 Pfam Pectinesterase 296 380 IPR000070 GO:0030599|GO:0042545
Rops9g02341 426 FunFam Pectinesterase 78 241 - -
Rops9g02341 426 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 241 IPR035513 -
Rops9g02341 426 SUPERFAMILY Pectin lyase-like 291 380 IPR011050 -
Rops9g02341 426 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 239 IPR035513 -
Rops9g02341 426 SMART PMEI_2 77 237 IPR006501 GO:0004857
Rops9g02341 426 PANTHER PECTINESTERASE 381 414 - -
Rops9g02341 426 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02341 Rops-Chr9 43000287 43004234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02341 379 425 Carbohydrate Esterase AT5G53370 82.979 1.70e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02341 - - gmx:106796002 541.191