Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02317 ATGTTTCATCGCAAGAGCAATTCTCCACAAGACCAGGAAAGCAACGAGCTTTATGCTGAATCCAAGATTAAAGAGCTCAAGGGTTCAATTGGACCCTTATCAGGACACAGCTTGAAGTACTGCACTGATGCTTGTTTGAGGAGATATCTGGAAGCTCGGAATTGGAATGTAGACAAGTCCAAGAAGATGTTGGAGGACACACTCAGGTGGAGATCAACCTATAAGCCCGAGGAAATCCGCTGGCATGAGGTTGCACTGGAAGGGGAGACAGGGAAACTGTACAGAGCAAATTTTCATGATAGACAAGGAAGGCCTGTTCTTATTTTGAGACCTGGAATGCAGAATACTTCTTCAATGGAGAATCAGATGCGGCATCTTGTGTATATTTTGGAAAATGCCATGCTTAACCTTCCACCAGGTCAAGAACAAATGGCATGGTTGATAGACTTCACTGGGTGGTCATTGACCAACAATGTGCCCATCAAATCAGCCAGAGAAACCATCAACATTCTACAAAATCACTATCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAATTTTTGAAGCTTTTTGGAAGATAGTCAAGTACTTCTTGGATAATAAGACATTTCAGAAGGTGAAGTTTGTCTACCCCAAAAATAAAGATAGTGTGGAGCTCATGAGGTCTTACTTTGATGAGGAAAATCTTCCCGAAGAACTAGGAGGAAAAAGCTTATTGAGCTATAATCATGAGGAGTTCTCCAGATTAATGACCCAGGATGATTTGAAATGTGCAGCCTTCTGGGGATCTGATGACAAGCTCTCTAACCACATTGCTAATGGGCATTTTACAGCAGAGGTAGCTCCAGAGCCAGTTTGCAATGAAACCCCAGTGACCTGA 891 0.431 MFHRKSNSPQDQESNELYAESKIKELKGSIGPLSGHSLKYCTDACLRRYLEARNWNVDKSKKMLEDTLRWRSTYKPEEIRWHEVALEGETGKLYRANFHDRQGRPVLILRPGMQNTSSMENQMRHLVYILENAMLNLPPGQEQMAWLIDFTGWSLTNNVPIKSARETINILQNHYPERLAIAFLYNPPRIFEAFWKIVKYFLDNKTFQKVKFVYPKNKDSVELMRSYFDEENLPEELGGKSLLSYNHEEFSRLMTQDDLKCAAFWGSDDKLSNHIANGHFTAEVAPEPVCNETPVT* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02317 296 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Rops9g02317 296 Gene3D - 3 269 IPR036865 -
Rops9g02317 296 CDD SEC14 99 240 IPR001251 -
Rops9g02317 296 SMART sec14_4 87 242 IPR001251 -
Rops9g02317 296 Pfam CRAL/TRIO domain 90 239 IPR001251 -
Rops9g02317 296 PANTHER GH16843P 7 271 - -
Rops9g02317 296 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Rops9g02317 296 FunFam Phosphatidylinositol transfer protein 3 2 274 - -
Rops9g02317 296 SUPERFAMILY CRAL/TRIO domain 81 252 IPR036865 -
Rops9g02317 296 SUPERFAMILY CRAL/TRIO N-terminal domain 20 83 IPR036273 -
Rops9g02317 296 Pfam CRAL/TRIO, N-terminal domain 40 66 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02317 Rops-Chr9 42662933 42665344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02317 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 26.442 1.91e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02317 K26544 - gmx:100790867 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02317 9 42662933 42665344 Rops9g02317 9 42662933 42665344 ECH