Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02288 ATGTGCATGTGTTTTTGTTTGTGTGATGAAGAAACTAAACGTGGTTCCGCTCAGTTTTTGGGTTTAGGATTTGGGTTCAATATTTTGGGTCGGGTTGGATTGGATCCATTCATCAATGAACAGACCTTGTTTGTGACCCGTTTCCTGATTTTGGGTTACTTTTGTGACAAGAAGAACATTGTTGGCCCGAGCCCACTGCCAGATCTATCGGTCCATCAGCGTTTGTTTCTGCAGATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGCCACCCCCAAGCCCTTCCTGCTCCAGCAACAATAATAACAATGATGCTGGCAATTTTGAATGCAACATTTGCTTTGACTTAGCACAAGACCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTGTACAAATGGCTTCACTTCCACTCACAGTCACGAGAATGCCCGGTGTGCAAGGCACTGATTGAGGAGGAGAAGTTGGTTCCCTTATATGGGAGAGGAAAGACATCAACTGACCCGAGATCAAAATCCATTCCTGGTGTTAATATCCCACATCGTCCTGCTGGTCATAGACCTGAAACTGCTCCTCCACCTGAACCAAATCCCTTTTCTCAACATGGGTTTGGATTCACAGGTGGGTTGGGAGGATTTGCACCTGCGGCAACCGCAAGATTTGGGAATTTCACGTTGTCTGCAGCATTTGGTGGTTTTATACCGTCCTTATTTAACTTTCAGTTGCATGGATTTCATGGTGGAACCATGTATGGTGGAGCAGCTGGTTTCCCTTATGGGTTTTCTAATTCATTTCATGGTAGCCATGTTCATGGATATCCTCTACACACAGGTCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGCTGTTTGTTATTTTTTGTGTGGTTCTTGCTTTAATATGGCAATAG 924 0.4448 MCMCFCLCDEETKRGSAQFLGLGFGFNILGRVGLDPFINEQTLFVTRFLILGYFCDKKNIVGPSPLPDLSVHQRLFLQMASGFGESTSRPPPSPSCSSNNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGHRPETAPPPEPNPFSQHGFGFTGGLGGFAPAATARFGNFTLSAAFGGFIPSLFNFQLHGFHGGTMYGGAAGFPYGFSNSFHGSHVHGYPLHTGQGQQDYYLKRLLLFVIFCVVLALIWQ* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02288 307 SUPERFAMILY RING/U-box 107 163 - -
Rops9g02288 307 MobiDBLite consensus disorder prediction 164 199 - -
Rops9g02288 307 SMART ring_2 110 150 IPR001841 -
Rops9g02288 307 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 94 164 - -
Rops9g02288 307 CDD RING-HC_AtRMA-like 108 152 - -
Rops9g02288 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 96 304 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops9g02288 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 164 IPR013083 -
Rops9g02288 307 ProSitePatterns Zinc finger RING-type signature. 125 134 IPR017907 -
Rops9g02288 307 Pfam Zinc finger, C3HC4 type (RING finger) 110 150 IPR018957 GO:0046872
Rops9g02288 307 ProSiteProfiles Zinc finger RING-type profile. 110 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02288 Rops-Chr9 42306497 42312551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02288 94 290 C3H Transcription Factor Family AT1G19310 67.943 2.62e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02288 K10666 - gmx:100527488 384.03