Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02260 ATGCTAAGAGACGAAAGCGTGGGTTCAAGAAGCGCCAGGCACAGCGTCACCGCCGTGTCGAATAAGGTTCTGGTGGCCGTTAAGGCGGAGAAGGTGATCTCCAATACGGCATTAGCTTGGGCACTCACTCATGTCGTTCACTCCAGTGACTCCATCACCCTGCTCGCCGTTTATTCCGCCGAGAAAACTGGTAGAAGATTCTGGAACTTTTCGAGATTTGCTGGAGATTGTACGAACGGACGCGCGGGAAAGTTACCGGAACGGATTTCTGATATCTCCGAGTCATGTGCTCAGATGGTGCTTCCGTTGCACAACCAAATTGAGGTTAGGGTGAAGATTAAGGTGGTCACGGGTACTCCCAGTGGTGCTGTGGCAGCTGAAGCTAGATGGAGTGGTTCCCACTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAAGCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGCTCACAACCAAAAGTCCTCAGGCTTAACTTAGGATCCTCCGATGAACTCCAAACCCCATTTTTCTCTGCTGCTTCTTCACCAGGGATAGAAATTGCAAAGCTAAAAGGCAGCAGATTGAAACATTCCACCCCAGTGGGTAGCCCTGAAGAAGCACAAGCAGGTACTTCTGTTACAAGAAACATCGGAGTAAATTCTGTGTCAAGTTTTGCCCGAAGGACTTCGCCTTTCCTAGTCTATGAACAAAACCCTCTATACGAGGGTCAGGGACCACAGAAAAGAACAAACAAACCAATCAACGAGCCAAAAGATTTCAATGTCCAGCCACCATTATACTTTGATTTGGAAAGGGATAGCCAACCCCTTTTGTGTACACGCCCAACATCATCTGTGGCTAGTGATAACAAGACTTTGTTTTGGATTCATCAAAACCACATTATGAATGAGAAGCTTCATAAAGCTGAAAACAGAACCATCCAAAGAACTAAATCTCCAACTTCTAAAACTTTACTTGAGAATTTCATACATTGTGATCAAGAGATAGGAATAAATGAACATGGGTTTAACCAAGCTCAGATTAGAAGTTATGTGGCCAACTCAGATATTAGAGATAATTCCATTCCCTTGGGCAGAACTTCCTCTATACCTCCTCCCTTATGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCTAGACGGTTTTCTTACAAAGAACTAGAGGAAGCTACTGACATGTTCTCAGATGCGAATTTTTTGGCTGAAGGTGGATTTGGTGTGACTCACAAGGGAATACTCAAAAATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTTTCTTGGCTCTCAAGCAGATCTTGATTTCTGCAGGGAGGTTCGGGTTTTGAGCTGTGCTCAACACAGAAATGTTGTATTGTTGATAGGATTTTGTACAGAGGACAATTTGAGGATATTAGTCTATGAGTACATATGTAACGGATCCTTGGACCTCTGCTTACATGGAGATGAGAGCATACCATTGGATTGGAACTCACGCTTAAAGATAGCTATTGGAGTTGCACGAGGCCTACGCTACCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGCCCCCAAAATATCCTCTTAACCCACGACTATGAGCCTCTGGTGGCTGATTTTGGGCTTGCTAGATGGCACTCAGAATGGAATGCAAATACTGAAGAGCGAGTTATAGGAACTTCAGGGTACCTTGCACCGGAGTATTTTGATGCTGGAAATCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTTTTATTAGAGCTAATAACTGGTCGAAGAATTAATGAGTTGGAAGAGTTAAATGGAAACTCATCATATCCTTCTGAATGGTTTCACCCCATACGCATGTTAGAACCTAATCATATCTTACAAGACTTTCGATCTCTCAACCCATGCTTGGATTCTGAGGCGTCACTGGAATTTAATCTTCAATTGCAAGCCATGGCAAGAGCTGCTTCGTTGTGTCTGCGTCCGGATCCTGATGCCAGACCTCAAATGTCAAAGATCCTCAGAGTTCTGGAAGGGGGTGATCCAGCAAGTCCTATGGGTTTAGACCTCAATTCAGTTGGTAACAGAAGTGGCCATTTAAGAGGTTTGACTTCACACACTCCACCTAAAGGTACAGTAAGACATTCTCGTAGACTATCACATTGA 2202 0.4391 MLRDESVGSRSARHSVTAVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAEKTGRRFWNFSRFAGDCTNGRAGKLPERISDISESCAQMVLPLHNQIEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMNGSQPKVLRLNLGSSDELQTPFFSAASSPGIEIAKLKGSRLKHSTPVGSPEEAQAGTSVTRNIGVNSVSSFARRTSPFLVYEQNPLYEGQGPQKRTNKPINEPKDFNVQPPLYFDLERDSQPLLCTRPTSSVASDNKTLFWIHQNHIMNEKLHKAENRTIQRTKSPTSKTLLENFIHCDQEIGINEHGFNQAQIRSYVANSDIRDNSIPLGRTSSIPPPLCSQCQNKAPVFGKPPRRFSYKELEEATDMFSDANFLAEGGFGVTHKGILKNGQVVAVKQLKFLGSQADLDFCREVRVLSCAQHRNVVLLIGFCTEDNLRILVYEYICNGSLDLCLHGDESIPLDWNSRLKIAIGVARGLRYLHEDCRVGCIVHRDLRPQNILLTHDYEPLVADFGLARWHSEWNANTEERVIGTSGYLAPEYFDAGNLTYKVDVYAFGIVLLELITGRRINELEELNGNSSYPSEWFHPIRMLEPNHILQDFRSLNPCLDSEASLEFNLQLQAMARAASLCLRPDPDARPQMSKILRVLEGGDPASPMGLDLNSVGNRSGHLRGLTSHTPPKGTVRHSRRLSH* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02260 733 MobiDBLite consensus disorder prediction 697 733 - -
Rops9g02260 733 Pfam Protein tyrosine and serine/threonine kinase 416 687 IPR001245 GO:0004672|GO:0006468
Rops9g02260 733 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Rops9g02260 733 FunFam Os07g0541700 protein 486 574 - -
Rops9g02260 733 SUPERFAMILY Protein kinase-like (PK-like) 390 689 IPR011009 -
Rops9g02260 733 ProSitePatterns Tyrosine protein kinases specific active-site signature. 531 543 IPR008266 GO:0004672|GO:0006468
Rops9g02260 733 ProSiteProfiles Protein kinase domain profile. 410 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops9g02260 733 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 382 485 - -
Rops9g02260 733 PANTHER OS01G0750732 PROTEIN 151 691 - -
Rops9g02260 733 Gene3D Transferase(Phosphotransferase) domain 1 486 696 - -
Rops9g02260 733 SMART tyrkin_6 410 689 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02260 Rops-Chr9 41854848 41859783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02260 385 685 Trihelix Transcription Factor Family AT1G68690 44.408 9.54e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Rops9g02260 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02260 - - gmx:100813141 1246.88