Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02247 ATGAGCACAATGTTGTCAACAAAAGTACTTTTGTGGTCTCTGTTTTTGTCTTGGTGCCAATTCTTCATCTCATGCAACGCCAATCAACAGGGTGAATCCCTCTACAACTTTATTCAATCACGGAGGTCTCAGAAGCCCTCACATGGTGAAGCTTCAAGTGGTGTTAATGGTGTGGTGGATGAACAATTTTCACAGGTATTTGTTGTAGAACAACAACTTGGGTCCATGGAAGTTGATAAGGTGAAGGCTTTACCAGGACAACCTGAAGGGGTGGATTTTGATCAATATGCAGGTTATGTAACAGTGGATGCTAAGGCAGGGAGAGCATTGTTCTACTATTTTGTGGAATCACCTCATAATTCTTCCACCAAGCCTCTTGTTCTATGGTTAAATGGAGGACCAGGGTGCTCTTCCCTGGGGTATGGAGCCATGCAAGAATTGGGACCTTTTAGAGTCAACAATGATGGAAGAACCCTTTACAGAAATGAATATGCATGGAACAATGTGGCAAATGTTATTTTCCTGGAGTCTCCAGCAGGAGTTGGTTTTTCATATTCTAACACTTCTTCAGACAACTCTAAAACTGGTGACAATAGCACAGCCATGGACTCTTACACTTTTCTTCTGAACTGGCTTGAGAGATTTCCACAGTATAAAACTAGAGACTTATTCATAACTGGAGAAAGTTATGCTGGCCATTATGTCCCTCAGCTGGCTGACACTATTCTCTCAAATAATAAGCTAATGAAAAATCACACGGTGATCAATTTGAAAGGGATTGCAATTGGGAATGGATGGATGGATGATAATATGTGTACAAAGGGAATGTATGACTATTTTTGGACACATGCTCTGAGCTCTGATGAAACTCATGAAGGAATTGAAAAGCACTGTGACTTTGGGAATGGTAATTTTACAAGTGAATGCTACAAATATCAAAGTATAGCGGATGAAGAGATTGGAAATCTTGACATATATAACTTATATGCTCCACCTTGTGATTCAAATGCAACAAAAACTGGTGGAAGTCCTACCACTTACTCTGGTAGCAATTTCGACCCTTGCTCTGATGATTATACCAAATCTTACTTAAATCTTGCTGAAGTTCAAGAAGCTCTTCATGCTAAAGCCTCAAAATGGTTTCCTTGCAGTGTGGTGGGATGGACAGATAGCCCAACAACTATTCTACCAACTATAAATCGGTTAATATCAAGTGGTATAAGCACTTGGATATATAGTGGCGATACAGATGGGCGTGTTCCCATAACGTCTTCAAGGTATTCAGTAAATGCCTTGAAACTTCCAGTGGATACAACATGGCGTCCATGGTACTCTAGCAATGAGGTTGGAGGATACATGGTTGGGTACAAAGGGCTCACACTGGTCACTGTAAGAGGAGCTGGGCACATGGTTCCAAGCTACCAACCACAGCGAGCACTAACAATGATCTCATTTTTCCTTCGTGGAGAACTCCCTCCTGAATCAACCTCTTAA 1494 0.4123 MSTMLSTKVLLWSLFLSWCQFFISCNANQQGESLYNFIQSRRSQKPSHGEASSGVNGVVDEQFSQVFVVEQQLGSMEVDKVKALPGQPEGVDFDQYAGYVTVDAKAGRALFYYFVESPHNSSTKPLVLWLNGGPGCSSLGYGAMQELGPFRVNNDGRTLYRNEYAWNNVANVIFLESPAGVGFSYSNTSSDNSKTGDNSTAMDSYTFLLNWLERFPQYKTRDLFITGESYAGHYVPQLADTILSNNKLMKNHTVINLKGIAIGNGWMDDNMCTKGMYDYFWTHALSSDETHEGIEKHCDFGNGNFTSECYKYQSIADEEIGNLDIYNLYAPPCDSNATKTGGSPTTYSGSNFDPCSDDYTKSYLNLAEVQEALHAKASKWFPCSVVGWTDSPTTILPTINRLISSGISTWIYSGDTDGRVPITSSRYSVNALKLPVDTTWRPWYSSNEVGGYMVGYKGLTLVTVRGAGHMVPSYQPQRALTMISFFLRGELPPESTS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02247 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 174 IPR001563 GO:0004185|GO:0006508
Rops9g02247 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
Rops9g02247 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 185 IPR001563 GO:0004185|GO:0006508
Rops9g02247 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 211 236 IPR001563 GO:0004185|GO:0006508
Rops9g02247 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 79 476 IPR001563 GO:0004185|GO:0006508
Rops9g02247 497 ProSitePatterns Serine carboxypeptidases, serine active site. 225 232 IPR018202 GO:0004185
Rops9g02247 497 Gene3D - 355 386 - -
Rops9g02247 497 FunFam Carboxypeptidase 395 489 - -
Rops9g02247 497 FunFam Carboxypeptidase 75 335 - -
Rops9g02247 497 SUPERFAMILY alpha/beta-Hydrolases 81 490 IPR029058 -
Rops9g02247 497 Gene3D alpha/beta hydrolase 75 335 IPR029058 -
Rops9g02247 497 Pfam Serine carboxypeptidase 85 488 IPR001563 GO:0004185|GO:0006508
Rops9g02247 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 459 476 IPR033124 GO:0004185
Rops9g02247 497 Gene3D - 395 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02247 Rops-Chr9 41603273 41608200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02247 360 490 Calmodulin-binding Proteins AT2G22960 29.412 1.31e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02247 K16297 - gmx:100818983 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02247 9 41603273 41608200 Rops9g02247 9 41603273 41608200 ECH