Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02246 ATGCAACAGTCAAACGGTCCTGATTCGTCGCCACAGAAACCTCAACAGACGGAACAGAATAAGCAACGGCAACCGCCGCCGCAGGCTCAGCCGGTGGCGGTGCCTCAGCAGTGGGTTCCGATGCAGTATCCGGCGGCGGCGGCGATGGTAATGCAACACCATCACCATATGTTGCCGCCGCCTCAACATTATGCGCCGCCGCCATACGTGCCTTACCATCACCACCAGTACCAGCCGCACGTGCCACATCAGCACCAGAACCAACAACAGCATGGATCCAACGGTGAGAACAAGACCGTTTGGATCGGCGATTTGCATCATTGGATGGATGAGAATTATCTCCATCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGTAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACACGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATGTTGATGCCCAATACAGATCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACGGGAGACAAGAGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGTTTGTTGCATGAAACTTTTGCTAGTGTATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGAACACAGGCTATGACCCAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACCCCCAGCCAATCCGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGCCATTCTCTCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGCCGGAAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGGACAACGATTGGCATCCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGAGTGGGGCATACTATGGGGGCCCTATTTATGATGGTTATGGATATGCTTTGCCACCTCCTCAAAACCCAGCCATATATGCTGCTGCTTATGGGGCTTACCCCATTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1281 0.4762 MQQSNGPDSSPQKPQQTEQNKQRQPPPQAQPVAVPQQWVPMQYPAAAAMVMQHHHHMLPPPQHYAPPPYVPYHHHQYQPHVPHQHQNQQQHGSNGENKTVWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGMLMPNTDQPFRLNWATFSTGDKSSDNVTDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTPSQSEADSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPAGKGCGFVQFANRNNAEEALQKLNGTTIGIQTVRLSWGRNPANKQFRMDFGNPWSGAYYGGPIYDGYGYALPPPQNPAIYAAAYGAYPIYGGHQQQVS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02246 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Rops9g02246 426 MobiDBLite consensus disorder prediction 266 302 - -
Rops9g02246 426 FunFam Polyadenylate-binding protein RBP47 281 398 - -
Rops9g02246 426 MobiDBLite consensus disorder prediction 1 27 - -
Rops9g02246 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 178 IPR000504 GO:0003723
Rops9g02246 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 88 372 - -
Rops9g02246 426 MobiDBLite consensus disorder prediction 73 96 - -
Rops9g02246 426 FunFam Polyadenylate-binding protein RBP47C isoform A 97 177 - -
Rops9g02246 426 FunFam Polyadenylate-binding protein RBP47C isoform A 190 266 - -
Rops9g02246 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 368 IPR000504 GO:0003723
Rops9g02246 426 CDD RRM3_NGR1_NAM8_like 295 366 - -
Rops9g02246 426 MobiDBLite consensus disorder prediction 81 96 - -
Rops9g02246 426 SUPERFAMILY RNA-binding domain, RBD 192 369 IPR035979 GO:0003676
Rops9g02246 426 SUPERFAMILY RNA-binding domain, RBD 58 180 IPR035979 GO:0003676
Rops9g02246 426 MobiDBLite consensus disorder prediction 1 33 - -
Rops9g02246 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 166 IPR000504 GO:0003723
Rops9g02246 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 360 IPR000504 GO:0003723
Rops9g02246 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Rops9g02246 426 Gene3D - 179 289 IPR012677 -
Rops9g02246 426 Gene3D - 290 397 IPR012677 -
Rops9g02246 426 SMART rrm1_1 192 266 IPR000504 GO:0003723
Rops9g02246 426 SMART rrm1_1 99 174 IPR000504 GO:0003723
Rops9g02246 426 SMART rrm1_1 297 364 IPR000504 GO:0003723
Rops9g02246 426 MobiDBLite consensus disorder prediction 271 302 - -
Rops9g02246 426 CDD RRM2_SECp43_like 190 269 - -
Rops9g02246 426 Gene3D - 97 177 IPR012677 -
Rops9g02246 426 CDD RRM1_SECp43_like 99 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02246 Rops-Chr9 41597861 41602296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02246 69 376 Eukaryotic Initiation Factors Gene Family AT4G34110 26.518 2.68e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02246 - - gmx:100801446 664.07