Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02245 ATGGGAAAGAAGGTGAAACTTGCTTTCATGGTCAATGATTCTGAAAGGAAGATATCATACAAGAAAAGAAAAAAGAGTCTGATGAAGAAGATGGATGAACTCAGCACCCTCTGTGGGATCAAGGCTTGTGCTATAGTTTTTAGCGAATTTGATCCTCGACCTGAGGTTTGGCCATCCCCATTGGAGGTTGAAAAGATGATCACCAAGTTCAGGAATTGTTGTGAATTTGATCTTGGCAAGAATAAGAAGAAGTTGGACCATGAGAGCTATCTGAAGCAGAGGGTTCTCAAGGCCAAAGAGCAATTAATGAAGATGAAGAAGAATAATAAGGAGAATGAGATTTCCTTCTTAATGTTTCAATATCTTGCAGGAATAAATATTCTGGATAATCTCAACATGGTTGATTTGAATGCTCTAACCTGGCTCATTGACGAGAAGCTGAAGGAGATTAGTTGGAGGATGGTCGAACTTGACAATCAGGCTTCAGCATCTCAGAGCCAAGCTCAAATGGTGGCATCAAGGGTGCCAGATGGAGCAACTAGCCAAGGAAATGAGGCACAAGTGGATCTTGACCTAGGGTTTGGGATGAACCTAGATGATACACTAGATCTACAATCAATTTTGAAATCGTTCAATGATTTAGATAATGCAATGCCGCCATTTCAATTACCATAA 675 0.403 MGKKVKLAFMVNDSERKISYKKRKKSLMKKMDELSTLCGIKACAIVFSEFDPRPEVWPSPLEVEKMITKFRNCCEFDLGKNKKKLDHESYLKQRVLKAKEQLMKMKKNNKENEISFLMFQYLAGINILDNLNMVDLNALTWLIDEKLKEISWRMVELDNQASASQSQAQMVASRVPDGATSQGNEAQVDLDLGFGMNLDDTLDLQSILKSFNDLDNAMPPFQLP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02245 224 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Rops9g02245 224 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Rops9g02245 224 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Rops9g02245 224 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Rops9g02245 224 Gene3D - 12 114 IPR036879 GO:0003677|GO:0046983
Rops9g02245 224 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Rops9g02245 224 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Rops9g02245 224 PANTHER MADS BOX PROTEIN 3 150 - -
Rops9g02245 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02245 Rops-Chr9 41573778 41574452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02245 3 162 Type I MADS-box Gene Family AT5G48670 48.750 1.49e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops9g02245 SRF-TF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02245 - - lja:Lj1g3v2809220.1 180.259