Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02211 ATGAACACTATTGGTGGGTTAAACTTGGATGATGAGATGAACATGATGTTGATGAGGATGCAGCAGCTCCCTGAATTCTCTGGGGCAACTACACACTCTACCATGGCACTATCAAATTCAATTGATAACCTTCCTACTCCTAGTGTTATGTCTTGGTCTCACATGCCATCAACTACAATCTCTTTCTCTAATTATAATCTTACTAGTAGTACTACCCCTTTGCTTCAAGAACAAGACCAAACCCCAGAACCCAAGTTGTTGAATTCAGCTACCAACGGTGCAAAAGTTTATTCAAAGAAACACAACTCGGTTTCTGCCATGAGGGAAATGATATTCATGATAGCAGCCATGCAACCGGTACACATAGACTCTGAGTCAGTGAAGCCACCAAAGAGAAGGAATGTTAAGATTTCAAAGGATCCTCAGAGTGTAGCAGCTAGGCTAAGGAGAGAAAGGATCAGTGAGAGGATAAGGATATTGCAGAGAATGGTCCCTGGTGGGACCAAGATGGACACTGCTTCTATGTTGGATGAAGCCATTCACTATGTCAAGTTTCTTAAGACAAAAGTTCAGTCACTTGAACAAGTTGCAGCAGCCAATAACAGGATTGGGTTCCCTTATTTTTCTCTCCCAAAACCTTATCAAGCTTCTCAAAATTCAAATTGTTGA 669 0.4141 MNTIGGLNLDDEMNMMLMRMQQLPEFSGATTHSTMALSNSIDNLPTPSVMSWSHMPSTTISFSNYNLTSSTTPLLQEQDQTPEPKLLNSATNGAKVYSKKHNSVSAMREMIFMIAAMQPVHIDSESVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTKVQSLEQVAAANNRIGFPYFSLPKPYQASQNSNC* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02211 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 199 IPR036638 GO:0046983
Rops9g02211 222 Pfam Helix-loop-helix DNA-binding domain 147 186 IPR011598 GO:0046983
Rops9g02211 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Rops9g02211 222 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 30 211 IPR045843 GO:0003700|GO:0006355
Rops9g02211 222 FunFam BHLH transcription factor 140 204 - -
Rops9g02211 222 SMART finulus 143 192 IPR011598 GO:0046983
Rops9g02211 222 Gene3D - 136 203 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02211 Rops-Chr9 40532794 40533462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02211 8 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 53.000 1.81e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops9g02211 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02211 - - gmx:100815041 213.386