Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02203 ATGGGAGATGAAGAACAAGTACTTTCTCAGCGTGATCTCCCTCCCCTCCCACCCGGTTGTTGCTTTTACCCTTCCGAGAAACTTCTCATCAGCCATTATTTAACTAAAAAGAACAGCGATGAGGGTGGAAATTTCATCAGTGCTGATTTGATTAGGGAGTTGAACCTCTATAACTATGATCCGTTTGAATTGCCTGACACGGCGTGTTTTTTGTATGGTCCCGATGGGAGGAAAAGGCACTGGTTCTGCTTCACTGATAGGGTTCTAAGTGTGAAACGGGACGCAAATACAGGGTTCTGGCTCATGAAGGGAAGGGTTAAGGACATTTCAGGTGGCGCTGGGAATGTCGTTTTGGGCACCAGAACCCGTTTCGTTTTCTATGCTGGCAACTCTGCCAGGAATGCTCACAGAACAGAGTGGTACTTGTATGAATTTGCCTTGGTTAACAATCCTCCGGGATCGTTTGTGCTTTGCCGTGTGTTTCTCAAACCTCAGAGGAATCGTGGATCAGAGACTGGTCAGAGTTCTATTTCGGAAGAGAGTGGCTCTGCATTGCGCAACATCGGGATTCAACATGATATAGGTGTTCTCCCGGTGAGCCACATTACTATTCAGAATAATAATATAAATGTTAACAAAAGGATTGAGAACCCTGCACGGTGTGCTGATGAAGAAGGTGATCGTGGAGATGTGGATGCACCACCACCTCCTATAGTGGCTCCTTCTCATGGGGACAATCAACAGGGGAGTTCAAATCTGCATTTAATGGATCAAGAAAAGAACCACATAAGTGGACTTGACACTAAATCTCAATCCAAAACCTTAAGATATCAGGAAAGGCTTTATGCAATTCATGAAGAGGAGCTTTTACGTGCCATCCGAGAGGGGGATTTCTTAGAATTGAACGATCTTGTATGA 918 0.4499 MGDEEQVLSQRDLPPLPPGCCFYPSEKLLISHYLTKKNSDEGGNFISADLIRELNLYNYDPFELPDTACFLYGPDGRKRHWFCFTDRVLSVKRDANTGFWLMKGRVKDISGGAGNVVLGTRTRFVFYAGNSARNAHRTEWYLYEFALVNNPPGSFVLCRVFLKPQRNRGSETGQSSISEESGSALRNIGIQHDIGVLPVSHITIQNNNINVNKRIENPARCADEEGDRGDVDAPPPPIVAPSHGDNQQGSSNLHLMDQEKNHISGLDTKSQSKTLRYQERLYAIHEEELLRAIREGDFLELNDLV* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02203 305 Gene3D NAC domain 25 168 IPR036093 GO:0003677|GO:0006355
Rops9g02203 305 Pfam No apical meristem (NAM) protein 17 147 IPR003441 GO:0003677|GO:0006355
Rops9g02203 305 SUPERFAMILY NAC domain 11 163 IPR036093 GO:0003677|GO:0006355
Rops9g02203 305 PANTHER NAC TRANSCRIPTION FACTOR 56 16 216 - -
Rops9g02203 305 ProSiteProfiles NAC domain profile. 16 163 IPR003441 GO:0003677|GO:0006355
Rops9g02203 305 MobiDBLite consensus disorder prediction 222 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02203 Rops-Chr9 40387081 40390301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02203 16 247 NAC Transcription Factor Family AT1G71930 28.287 3.54e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g02203 NAM 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02203 - - gmx:100785871 220.32