Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02198 ATGGTAGAAGGACAAGAACCTCATCGTGCTTTCGCGCTCCCACCCGGTTGCCGTTTCTACCCCTCCGAGGAACTTCTCCTTCGCTACTACCTCACCAAAAAGAACAACAATGAGGTTGTGGCTTTCGAAGGTGCTGATTTGATCAAAGAATTGAATCTTTATGATCATGATCCATTCGAATTGCCAGACTCTGCGTGTTTTTTTTACGGTGCTGGTGGGAGGAAGCCACATTGGTTCTGTTTTACTGTGAGGAACCTGAATGTGAAAAGGGATACTAACACTGGGTTTTGGCTCAGGAAGGGAGGGATTAAGGACATTCCAGATGGCACTCAGAATGTCATTCTAGGCTCCAGAACTCATTTCGTATTCTATGCTGGCAACTCTGCAAGGACTGCTCGCAGAACCGAGTGGAATTTGTTTGAGTACGCTTTGGTTAACCAGCTTCCGGACTCGTTCGTCCTTTGCCGTGTGTTTCTCAAGCGTCAGAGGAATCACGGATCAGAGACTGGTCAGAGTGCTATGTCGGAAGAGAGTAGCTCTGCAGTGCGCAACATCGGAATTCAACATGATGTAGGAGTCCCCCCAGTGAACCACATTAATATTCATAATAATAATCATAATAATAGTATAAATGTTAACCTAAGGATTGAGAACGTTGCACCGCGTGCTGATGAAGAAGGTGATCGTGGAGATGTGGCTGCACCTCCACCTCCTGTGGTGGCTCCTCCTCCTGAGGACAATCAACAGGAAAAATAA 756 0.4656 MVEGQEPHRAFALPPGCRFYPSEELLLRYYLTKKNNNEVVAFEGADLIKELNLYDHDPFELPDSACFFYGAGGRKPHWFCFTVRNLNVKRDTNTGFWLRKGGIKDIPDGTQNVILGSRTHFVFYAGNSARTARRTEWNLFEYALVNQLPDSFVLCRVFLKRQRNHGSETGQSAMSEESSSAVRNIGIQHDVGVPPVNHINIHNNNHNNSINVNLRIENVAPRADEEGDRGDVAAPPPPVVAPPPEDNQQEK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02198 251 Gene3D NAC domain 22 165 IPR036093 GO:0003677|GO:0006355
Rops9g02198 251 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 178 - -
Rops9g02198 251 MobiDBLite consensus disorder prediction 220 251 - -
Rops9g02198 251 ProSiteProfiles NAC domain profile. 13 160 IPR003441 GO:0003677|GO:0006355
Rops9g02198 251 Pfam No apical meristem (NAM) protein 14 144 IPR003441 GO:0003677|GO:0006355
Rops9g02198 251 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02198 Rops-Chr9 40284033 40284880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02198 12 162 NAC Transcription Factor Family AT2G24430 34.356 6.60e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops9g02198 NAM 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02198 - - aip:107605653 218.394