Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02195 ATGGGAGAAACGGATTATTGTTCCACAAATTCATCGATCAAAAGCTCAAGAGAGAAGGCAAAGAAGCAAGAACAAGAGAAACCAATGAAACGTTACAGAGGAATAAGGATGAGGAAGTGGGGTAAGTGGGTTGCTGAGATAAGAGAACCAAACAAGAGGTCAAGGATTTGGTTGGGGTCTTACACCACCGCAGTTGCCGCCGCAAGAGCCTACGACACGGCGGTGTTCTACCTCAGAGGCCCTTCAGCTCGGCTCAACTTCCCTGAATTGTTGTTCCAAGATCAAGAAGAAAATGGTTCAATTCAACAAGGGAACATGTCTGCTGATTCAATACGCCAAAAAGCAACACAAGTTGGTGCTAGAGTTGATGCTCTTCAAACGGCTCTTCATGCTTCTCCACACTCCTCTTCAACAACTTCTTCCCAGAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTAA 465 0.4495 MGETDYCSTNSSIKSSREKAKKQEQEKPMKRYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTAVAAARAYDTAVFYLRGPSARLNFPELLFQDQEENGSIQQGNMSADSIRQKATQVGARVDALQTALHASPHSSSTTSSQKPDLNEFPKPED* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02195 154 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Rops9g02195 154 MobiDBLite consensus disorder prediction 96 114 - -
Rops9g02195 154 MobiDBLite consensus disorder prediction 15 30 - -
Rops9g02195 154 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Rops9g02195 154 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Rops9g02195 154 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Rops9g02195 154 MobiDBLite consensus disorder prediction 129 146 - -
Rops9g02195 154 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Rops9g02195 154 CDD AP2 30 90 IPR001471 GO:0003700|GO:0006355
Rops9g02195 154 MobiDBLite consensus disorder prediction 96 154 - -
Rops9g02195 154 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Rops9g02195 154 MobiDBLite consensus disorder prediction 1 30 - -
Rops9g02195 154 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Rops9g02195 154 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
Rops9g02195 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02195 Rops-Chr9 40211116 40212210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02195 25 154 AP2-EREBP Transcription Factor Family AT2G23340 56.250 7.42e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g02195 AP2 5.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02195 K09286 - gmx:100801528 203.756