Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02188 ATGGCTGTGGAGCTTATAACGGGTTATGGGGGTGATGGTTTTGAAGCAAGGAGTAATGTGAGTGATGAAAATGCAATTGCAGTTCAGGAAGCAGCTTCTGCTGGGATTCATAGTGTTGAGAAACTCATGAACATGATTTCTGAACAGAAGAATCAGCAACAAAAGATTAATGATGGTTCTTCTGAATTTGAAGCTGTTGCTGATGTTGCAGTGAATAGGTTTAAAGAGGTTATTTCTCTCCTTGATAAACCAAGAACTGGTCATGCTCGTTTCAGAAAGGCTCCAACAACAACTGCGCCACCTGTTCCTCTTCTTCAATTGCAACAAACGGTGGATTCAAAACCAAAACTTTCTTCTTCTTCTTCTTCTCTTTTGCAAAAGACAGAACAAGGTTCTGCTTTCAAGGTTTATACCCCTACACAGGTTCTAAAGCCCCCTCCTTTGCCACAAAATTACCCTTTCCCTCAGAAGCATCAAACTTTACCACCAGAGAAAAATGAAGTACATGGTTCTATTAAATTTTCAGCTTCACCATCAGTTTCCGCCGCAAACTCATTTATATCTACGTTAACCGGGGACAGTGAAAGTTTGCAAAGGCCTTGTCGTTCTTCAGGGTTCCAAATTACTCGTGTGTCATTGCAGGGTTCTTCTTATATGCGTAAACCACCACTTTCTTCAAGTTCTATGAAGAGGAAGTGCAATTCCATGGAGTTTCCTGCTATTAAGTGTGGATCATCCTCTGCTCAGTGCCATTGCTCCAAGAAAAGGAAATTGAAGTTGAAGAGAGTGATTAGAGTACCAGCTATTAGTTCCAAAACTGCTGATATCCCACCTGATGATTATTCATGGAGAAAATATGGACAAAAACCCATCAAAGGCTCTCCCCATCCTAGAGGTTATTACAAGTGCACGAGTGTGAGAGGCTGCCCTGCACGCAAACATGTGGAACGTGCTGTGGATGATTCGAACATGCTTGTTGTCACCTATGAAGGAGATCATAATCACTCGCACACTGATTCTGTGGTGGCTAATGCTGTTGTCCTTAAATCATCTTAG 1056 0.4186 MAVELITGYGGDGFEARSNVSDENAIAVQEAASAGIHSVEKLMNMISEQKNQQQKINDGSSEFEAVADVAVNRFKEVISLLDKPRTGHARFRKAPTTTAPPVPLLQLQQTVDSKPKLSSSSSSLLQKTEQGSAFKVYTPTQVLKPPPLPQNYPFPQKHQTLPPEKNEVHGSIKFSASPSVSAANSFISTLTGDSESLQRPCRSSGFQITRVSLQGSSYMRKPPLSSSSMKRKCNSMEFPAIKCGSSSAQCHCSKKRKLKLKRVIRVPAISSKTADIPPDDYSWRKYGQKPIKGSPHPRGYYKCTSVRGCPARKHVERAVDDSNMLVVTYEGDHNHSHTDSVVANAVVLKSS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02188 351 SUPERFAMILY WRKY DNA-binding domain 273 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g02188 351 Pfam WRKY DNA -binding domain 279 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g02188 351 SMART WRKY_cls 277 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops9g02188 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 28 340 IPR044810 GO:0003700
Rops9g02188 351 FunFam WRKY transcription factor 65 261 338 - -
Rops9g02188 351 Gene3D WRKY domain 263 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops9g02188 351 Pfam Plant zinc cluster domain 230 275 IPR018872 -
Rops9g02188 351 ProSiteProfiles WRKY domain profile. 272 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02188 Rops-Chr9 40086560 40088379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02188 14 298 WRKY Transcription Factor Family AT4G24240 47.987 1.41e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops9g02188 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02188 - - lja:Lj0g3v0162929.1 499.59