Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02148 ATGGGAACGGAGAGTTACACTTACATGGGACGCAGTTTGAGAGAACTCAGCATCAATGACGATTCTTCTTCTTCCGCTTTCAGCGACTGTAACAGTGACAGATCCGGCGAATTCGCCACCGCTTCTTCACAAACACGACGATTCCTCATCGCTTGCGCTTCTGAAAATTCCGACGATTTCGTCCGTCAACTCGTTTCCGATCTCAATTCCGATTCAATCGACGAAAGAAAACAAGCAGCGATGGAAATCCGATTACTCGCCAAAAACAAGCCAGAAAATCGCATCAAAATCGCCAAAGCAGGCGCTATCAAACCGTTAATTTCTCTCATTTCTTCAGGAGACCTCCAACTTCAAGAATACGGCGTCACCGCGATTTTGAATCTTTCCTTATGCGATGAGAACAAAGAGTTGATAGCTTCGTCTGGAGCGATTAAGCCTCTGGTTAGAGCCTTAGGCACCGGAACTTCAACGGCGAAGGAGAACGCGGCGTGCGCGTTGCTTCGTTTGTCTCAGGTTGAGGACAACAAATCGGCGATCGGAAGGTCCGGCGCAATTCCGTTGCTGGTGAACCTTCTAGGAACAGGTCACTTCCGCGGGAAGAAGGATGCATCAACGGCGCTTTACTCGCTCTGTTCGGTGAAGGAGAACAAGATCAGAGCGGTGAAAGCGGGAATCATGAAGGTTCTTGTTGAATTAATGGCGGATTTTGAATCGAACATGGTGGATAAATCGGCGTATGTTGTGAGCGTGCTGGTGTCGATGCCGGAGGCGAAGGCGGCGCTGGTGGAGGAAGGTGGTGTTCCGGTGCTGGTGGAGATCGTGGAGGTTGGTTCTCAGAGACAGAAGGAAATCTCGGTGGTTATTCTGTTACAGCTGTGTGAGGATAGCGTGACCTATCGAACCATGGTGTCTCGAGAAGGTGCGATTCCTCCTTTGGTTGCTTTGACACAGTCCGGCACCAATCGCGCTAAGCAAAAGGTATTGTATTTTATTTTCAGTTCAACATCACTACCATACCACCACCACTCGCGGTCGCTGACGTGGCACGGTGTTTGTTGTTCTTTCGAACAACTTGTAGGGCCACGTCAGCCTCCTTGCAGAGTCGACCTCCACCCACCGCAAAATTGA 1128 0.5 MGTESYTYMGRSLRELSINDDSSSSAFSDCNSDRSGEFATASSQTRRFLIACASENSDDFVRQLVSDLNSDSIDERKQAAMEIRLLAKNKPENRIKIAKAGAIKPLISLISSGDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALGTGTSTAKENAACALLRLSQVEDNKSAIGRSGAIPLLVNLLGTGHFRGKKDASTALYSLCSVKENKIRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSMPEAKAALVEEGGVPVLVEIVEVGSQRQKEISVVILLQLCEDSVTYRTMVSREGAIPPLVALTQSGTNRAKQKVLYFIFSSTSLPYHHHSRSLTWHGVCCSFEQLVGPRQPPCRVDLHPPQN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02148 375 Gene3D - 38 343 IPR011989 -
Rops9g02148 375 SMART arm_5 131 171 IPR000225 GO:0005515
Rops9g02148 375 SMART arm_5 90 130 IPR000225 GO:0005515
Rops9g02148 375 SMART arm_5 172 212 IPR000225 GO:0005515
Rops9g02148 375 SMART arm_5 213 253 IPR000225 GO:0005515
Rops9g02148 375 SMART arm_5 254 294 IPR000225 GO:0005515
Rops9g02148 375 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Rops9g02148 375 PANTHER U BOX DOMAIN-CONTAINING 60 326 - -
Rops9g02148 375 FunFam RING-type E3 ubiquitin transferase 50 337 - -
Rops9g02148 375 SUPERFAMILY ARM repeat 57 332 IPR016024 -
Rops9g02148 375 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Rops9g02148 375 Pfam Armadillo/beta-catenin-like repeat 174 212 IPR000225 GO:0005515
Rops9g02148 375 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02148 Rops-Chr9 39440156 39442247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02148 144 346 U-box Gene Family AT2G23140 27.536 3.95e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02148 - - gmx:100797550 536.954