Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02124 ATGCCTTTGTATATGGCATCTAATGAGAGAAAAGATGAGGATTTGAAGACTGATGCTGTGTTGGGTCTAGAAACCAACATGAAAGGTGGTGTTTTTGGTGGCAGTGCCACTGAGAAATTGGATCTGAAGGTGATGATTGAGGAGCTGGAGTCAATTGATGTGCCTTCTGTGTTTATCTGTCCAATCTCATTGGAACCAATGCAGGATCCAGTGACCCTTTGCACAGGTCAAACCTATGACAGGTCCAACATCCTCAAATGGTTCTCACTTGGTCACAATACTTGTCCCACAACAATGCAAGATCTTTGGGATGATTCTGTCACACCCAACAAGACTCTCAGCCACTTAATCTTCACTTGGTTCTCTCAGAAGTACTTGGCCATGAAGAAGAAGCTTGAGGATGTGCAAGGAAGAGCCTTGGAACTGTTGGAAACACTCAAGAAGGTAAAGGGTCAAGCTAGAGTAAGAGCTCTTAAGGATCTTAGGCAACTTCTTGTTGCTCATGTGCCTGCTAGGAAGACTGTTGAAGAAAATAATGGGCTTGTTTTGGTTTCCTCTTTGTTGGGTCCTTTCACTTCTCATGCTGTTGGGTCTGAAGCGATTGGGATTATTGTGAATTTGGATTTGAGTTCAGAGCTGAAGAGAAATCTGATGCATCCTGCTAAGGTATCTTTGGTGGTGGATATCATGAATGAGGGAACTATTGAGACAAAGATGAACTGTGCCAAATTGATTGAAATGTTGTTGATGGAAGGGAATGGCACTGAGAGAGAGATTGTCTCAAGTTTGAGTCTTTTGGTTGGGTTATTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGTCTCATATTACTTAAGGCCATATGTTCACATGAATCAGTTAGAACCTCTGTGATAAGCTTAGGAGCAGTTCCTCAATTGATTGAGCTTTTGCCAACTTTGAATAAAGAGTGTTTAGAGATAACACTCTATATTTTAGAGGTACTGTCAACACTTCCAGAGGGAAGAATGGCTTTGAAAGAATGTCCAAACATTATTCCCAATGTGGTCAAGTTGTTGATGAGAGTCTCAGAGAGCTGTACACAATTTGCTTTGTCAATATTGTGGGCTATCTACAAGCTTGCTCCTGAAGAATGTGCTTCACAGGCTGTGGAAGCTGGTTTGGCAGCAAAATTATTGTTAGTAATTCAGAGTGGATGCAACCCAGTTTTGAAGCAGATGTCTTCTGAGTTTTTGAAAATGTGCAGTTTGAATTATTCTACTAATATCTTGATTTCCAAGTGTATGCTTACCACAACAATACAATGA 1320 0.4114 MPLYMASNERKDEDLKTDAVLGLETNMKGGVFGGSATEKLDLKVMIEELESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNKTLSHLIFTWFSQKYLAMKKKLEDVQGRALELLETLKKVKGQARVRALKDLRQLLVAHVPARKTVEENNGLVLVSSLLGPFTSHAVGSEAIGIIVNLDLSSELKRNLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMEGNGTEREIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSHESVRTSVISLGAVPQLIELLPTLNKECLEITLYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTNILISKCMLTTTIQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02124 439 Gene3D - 139 418 IPR011989 -
Rops9g02124 439 Pfam U-box domain 54 124 IPR003613 GO:0004842|GO:0016567
Rops9g02124 439 ProSiteProfiles U-box domain profile. 53 127 IPR003613 GO:0004842|GO:0016567
Rops9g02124 439 SUPERFAMILY RING/U-box 48 124 - -
Rops9g02124 439 SMART Ubox_2 57 120 IPR003613 GO:0004842|GO:0016567
Rops9g02124 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 136 IPR013083 -
Rops9g02124 439 CDD RING-Ubox_PUB 55 107 IPR045210 -
Rops9g02124 439 SUPERFAMILY ARM repeat 142 424 IPR016024 -
Rops9g02124 439 PANTHER WDSAM1 PROTEIN 48 425 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02124 Rops-Chr9 39165772 39167449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02124 1 439 U-box Gene Family AT3G49810 60.175 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02124 - - gmx:100803878 667.922