Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02113 ATGACACCTGAGAGGAAGAAAGCGGATTGCCTGTACGGCACCGTTTTAGACCGCAGCAAGAGAAGTTCTAGAAGTCTTGGCTTTGTTGCATTCTTTGAAATGGCTTGTGTTGATCAACCCCTCAAAGATACCCTTGAAAAAACGGGAGAAGTGGAGAAAGAAATAGCCATAGATGAAGGGCAACAACAGAAGCAATTACAAAGTAAATGTAAGTCTAACAGTGCTGAAGACATTAGGAGAAAGAAAATTTTTGTTGGAGGCTTAGCTTCGGACACATCTAAGGAAGAGTTTAAGGAATATTTTGAGAAGTTTGGTAAAATAACAGATGTGGTGGTGATGCAAGACAGTGTAACACACAAGCCTAGAGGATTTGGATTCATAACTTTTGATTCAGAAAAATCTGTTGAAGAGGTTCTAGTGAATAGCTTTCATGACCTTAATGGTAAACAAGTTGAGGTCAAAAGGGTTGTGCCAAAAGAGGAGAAATGTGTTTGTGATAAATTGAGATGTAAGAATAGAACAGGAACCTCTTCACAAAGTTTTCCTCTTCCTGGGTACAACAATAATGTATTATATGTCCCTGCATCAAACACCTATGGTGGTTGGTACCCTATGAATGGATATGGAGTTCCATGTGATCCTTATAGGAACATTGTTTATGTACCCATGGCACAGCCAAGTTTGAACCCTGCCTATTTTTTGCCAAATCTCGCATATATCGGTGGTAATGCTGGGCAGTGA 741 0.3981 MTPERKKADCLYGTVLDRSKRSSRSLGFVAFFEMACVDQPLKDTLEKTGEVEKEIAIDEGQQQKQLQSKCKSNSAEDIRRKKIFVGGLASDTSKEEFKEYFEKFGKITDVVVMQDSVTHKPRGFGFITFDSEKSVEEVLVNSFHDLNGKQVEVKRVVPKEEKCVCDKLRCKNRTGTSSQSFPLPGYNNNVLYVPASNTYGGWYPMNGYGVPCDPYRNIVYVPMAQPSLNPAYFLPNLAYIGGNAGQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02113 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 141 IPR000504 GO:0003723
Rops9g02113 246 Gene3D - 41 164 IPR012677 -
Rops9g02113 246 SUPERFAMILY RNA-binding domain, RBD 74 169 IPR035979 GO:0003676
Rops9g02113 246 CDD RRM2_Hrp1p 82 159 - -
Rops9g02113 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 158 IPR000504 GO:0003723
Rops9g02113 246 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 17 209 - -
Rops9g02113 246 SMART rrm1_1 82 154 IPR000504 GO:0003723
Rops9g02113 246 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 76 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02113 Rops-Chr9 38919438 38921062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02113 77 139 C2H2 Transcription Factor Family AT2G19380 38.095 4.33e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02113 K14411 - gmx:100786665 181.03