Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02098 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGATGCTACCCTCAAATCCTACATAGAACAACATGGCACCGGTGGCAACTGGATTGCTTTGCCACAAAAAATTGGCTTGAAGCGTTGTGGCAAAAGTTGCCGTCTTAGGTGGCTAAACTATCTTCGCCCTAATCTAAAGCATGGTGGTTTCTCTGAAGAAGAAGACAACATTATTTGCAGCCTTTACGTTAGTATTGGAAGCAGGTGGTCGGTTATTGCAGCTCAATTGCCAGGAAGAACTGATAATGACATAAAGAACTACTGGAACACAAGGCTGAAAAAGAAGCTTCTTATGGGGAAGCACCGAAAAGAACAAAACGCATGTGATAGAGGCAACAACTGTGTTGTTAAGCAAGAAAGGAATGGAGAAAGTGGTGAATATTCCTATTCCTTATCTTTAGTTCAGGAAAACAGTACTCAACAACAGCCATATTTGCCACACATGCCTGTGTTATCACCACCACCACCATTGCCATACACAAACCAAGACACGTGTTTCAATGATCAAGATTCTATTAAGAAATTGCTTATCAAGCTTGGAGGGAGATTTTGTGGTGATGGTGGTGATTATTATCCTACCGTCGATGAGTTGAATCTTCAATTCTCAAATGGTACTCCCTCCACCCCACAAATTTATCACCAACAAGTCCATATGAGGGTTGAATCTTCTTCTTGCATTAACAACAATGAAGTTCAATTTGCACAAACTGGTCAATATGCTGATGGACTTGACTTAGTGCAAGGAGAGGGAAGTTTCACCCCAATTGAGGAAATGATATCTACTAATTATGCACAAAGATTAGATGGGTTGGAGTTTTTCTATGGAGATGATATGATTGATCATAAGATAATAGGCTCTCCTACTTGTAGCCAAAGTAACAACTGGGGTGAAACTAGCACTTCCATTTATCATTCACTTGCTTCAAATTACCAAGGTTAA 1002 0.4092 MGRAPCCDKANVKKGPWSPEEDATLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLMGKHRKEQNACDRGNNCVVKQERNGESGEYSYSLSLVQENSTQQQPYLPHMPVLSPPPPLPYTNQDTCFNDQDSIKKLLIKLGGRFCGDGGDYYPTVDELNLQFSNGTPSTPQIYHQQVHMRVESSSCINNNEVQFAQTGQYADGLDLVQGEGSFTPIEEMISTNYAQRLDGLEFFYGDDMIDHKIIGSPTCSQSNNWGETSTSIYHSLASNYQG* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02098 333 CDD SANT 71 113 IPR001005 -
Rops9g02098 333 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops9g02098 333 FunFam Transcription factor RAX3 7 68 - -
Rops9g02098 333 Gene3D - 7 68 - -
Rops9g02098 333 PANTHER OS09G0431300 PROTEIN 1 254 - -
Rops9g02098 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops9g02098 333 CDD SANT 16 62 IPR001005 -
Rops9g02098 333 SMART sant 13 64 IPR001005 -
Rops9g02098 333 SMART sant 67 115 IPR001005 -
Rops9g02098 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops9g02098 333 Gene3D - 70 142 - -
Rops9g02098 333 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops9g02098 333 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops9g02098 333 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops9g02098 333 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02098 Rops-Chr9 38569822 38571772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02098 1 199 MYB Transcription Factor Family AT3G49690 64.322 5.40e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02098 Myb_DNA-binding 6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02098 K09422 - gmx:100800290 433.335