Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02096 ATGGGTTTTGATGGACCCTCCAACACAAGGCTTCAACTTGGTCTTGGTCTTGGCTTCCATGATCATGAATCAGAGGATTGCATGAAGAAAAAGGTGGAGAATCAACCAAAATGTAAGAAGGCATATCCATCACTTACTTTAGGACCACCTGATGAAGATGAAGCAAATAATCAACCTACAGCTTCAAAGACTGAAGAATCCTGTGAATATTTACGTCCCCAAGTTCTTTCTCCCAGCACAGAGTCTTCATTTTCCAACTCTTCTAGCATCAAGAGGGAGAGAGATCAAGTTTTAGGTGTTGAGGAATTTGAACTAGAGGTAGAGAAGGTTCCAACAAGGGAAGCTGATGTTGATGAAGATGGTAACCCCAGGAAGAAACTCAGGCTCACCAAAGAACAATCTGCAGTCTTGGAGGAACACTTCAGAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAAAAAGCTGAACCTGCGTGCTAGACAAGTAGAAGTGTGGTTTCAAAACAGGAGAGCTAGGACAAAACTGAAACAAACCGAATCTGATCGTGAATTACTAAAGAAGTGTTGTGAAACACTGACAGAGGAGAACAAGAAGCTGCAAAAGGAGCTACTAGAACTTAAGTCAATGCAAACAACTTCATCACCCTTTTATATGCAGATTCCAGCAGCCACACTTACCATATGCCCTTCATGTGAGAGAATTTGTGGTGGTAACAACAATGGCTCCTCACCCACTACAACTTTGTTTATTGGCTCAAAGGCACATAATCACTTCTTTAATAGTAACTATCCATTCCCCCACTCATCATCAGCAGAGTTAATTAGCTAA 840 0.4155 MGFDGPSNTRLQLGLGLGFHDHESEDCMKKKVENQPKCKKAYPSLTLGPPDEDEANNQPTASKTEESCEYLRPQVLSPSTESSFSNSSSIKRERDQVLGVEEFELEVEKVPTREADVDEDGNPRKKLRLTKEQSAVLEEHFREHSTLNPKQKQELAKKLNLRARQVEVWFQNRRARTKLKQTESDRELLKKCCETLTEENKKLQKELLELKSMQTTSSPFYMQIPAATLTICPSCERICGGNNNGSSPTTTLFIGSKAHNHFFNSNYPFPHSSSAELIS* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02096 279 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Rops9g02096 279 SMART HOX_1 122 184 IPR001356 GO:0003677
Rops9g02096 279 MobiDBLite consensus disorder prediction 51 90 - -
Rops9g02096 279 CDD homeodomain 123 181 IPR001356 GO:0003677
Rops9g02096 279 FunFam Homeobox-leucine zipper protein 18 108 185 - -
Rops9g02096 279 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
Rops9g02096 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 250 - -
Rops9g02096 279 Coils Coil 179 213 - -
Rops9g02096 279 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Rops9g02096 279 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Rops9g02096 279 SUPERFAMILY Homeodomain-like 121 187 IPR009057 -
Rops9g02096 279 MobiDBLite consensus disorder prediction 32 90 - -
Rops9g02096 279 Gene3D - 117 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02096 Rops-Chr9 38513309 38515166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02096 1 275 Homeobox Transcription Factor Family AT2G22800 47.766 5.46e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops9g02096 Homeodomain 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02096 K09338 - gmx:100807072 371.703