Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02092 ATGGGAAGAGCTCCTTGTTGTGATAAAGCAAATGTTAAGAGGGGACCATGGTCTCCTGAAGAAGATGCAACACTCAAGAGTTATGTAGAGACTCATGGCACTGGTGGAAATTGGATTGCATTGCCAAGAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTAAGGTGGCTCAATTATCTCAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAGGACAACATCATTTGCACCCTCTATACTCAAATGGGAAGCAGATGGTCAGCTATAGCATCTCAACTTCCTGGCAGGACAGACAATGATGTGAAAAACTACTGGAACACAAAACTCAAAAAGAAGATAATGGCAGGAAAAGTTAGCTTCAAAGCTTTGGCTGAAAATGACACTCTTCCTTCAACCCCATCACTAACTCAAGATAAAAATTCAGATTTCCCTGCTTCACAAAATCAAAATTCTCCACCCTCAGTGCTGCCAATCTTAGATACTCATGATACTAGTTTTGGATTCAACATCAATGAAAAAAACATGGGTTTTGACCAAATCCATCAGTTGTACAGTCCAAGGATCATGGATGTTGTTGTCCCAGAAATTGGTGCAAGTTTAAGTAACAATTATCCCGTGGTGTCAATGTCTCAAGAAGGTTCAAGCATTTTAGATTCATCTTCCATTGCAATGAACACCAAGTGTGTATCCATGCCAGAACATGCTAGTGATGGATCTAATGAAATGTTGATGGATTTTGGCTTTGGATTTCCTTATGACCTTGTCAATGGTCTAACCTGCGATGAGAGAGTTGTTGAGTTTGCTCCAAGTAGTTGCTCTCTTGAGTGGGTTGATTTTAACTTTTCTGACATTAAGCCACATTGA 876 0.4098 MGRAPCCDKANVKRGPWSPEEDATLKSYVETHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYTQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKIMAGKVSFKALAENDTLPSTPSLTQDKNSDFPASQNQNSPPSVLPILDTHDTSFGFNINEKNMGFDQIHQLYSPRIMDVVVPEIGASLSNNYPVVSMSQEGSSILDSSSIAMNTKCVSMPEHASDGSNEMLMDFGFGFPYDLVNGLTCDERVVEFAPSSCSLEWVDFNFSDIKPH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02092 291 CDD SANT 71 113 IPR001005 -
Rops9g02092 291 FunFam Transcription factor RAX3 70 136 - -
Rops9g02092 291 Gene3D - 70 145 - -
Rops9g02092 291 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops9g02092 291 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops9g02092 291 MobiDBLite consensus disorder prediction 133 160 - -
Rops9g02092 291 CDD SANT 16 62 IPR001005 -
Rops9g02092 291 SMART sant 67 115 IPR001005 -
Rops9g02092 291 SMART sant 13 64 IPR001005 -
Rops9g02092 291 FunFam Transcription factor RAX3 7 68 - -
Rops9g02092 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops9g02092 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Rops9g02092 291 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops9g02092 291 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops9g02092 291 PANTHER OS09G0431300 PROTEIN 1 243 - -
Rops9g02092 291 Gene3D - 7 68 - -
Rops9g02092 291 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02092 Rops-Chr9 38370774 38372597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02092 1 118 MYB Transcription Factor Family AT3G49690 82.203 3.54e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops9g02092 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02092 K09422 - gmx:100789985 426.017