Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02072 ATGTCAATGGAGAATGATATGTACAGTGCTCCACTGGATATGGCTTGCCCAAATTCTACTGTCATAGGAGATATTACTCAGCATCTCACTCCAAAGCAACTAATCTATTGCAATTCATTTGACCTCAATAACCAAAACCACATAATAAGTGGAATTCCAATACTTGCCGGAGAGCAAGGAAAGACTATTGGGGGAGATGCCTCAAGTCCCATTGACAACACTGACTTTCAAGAACATTTAGCTGGAGCAAGGCCAATTCCTTCTGCTTCACTTCCTGCTAGAATTGGTCTTCAAGAAAATTTGGAAAATTCAGCAGCTTTGTCTCCTTCAGTGGGTTCCTTGGAGACATTGGGATCATATATTTTCAATAATTGGCAAGATACCTCAAACCCTTTGGCTGCAACTTTTGTTGATAGTGGCTATGAAGTACCTGGTAATGGTAAGTGGAATGTCAACAAGTTTCTGAAAGCTCAAGAGATTGATGGGACTGAGTTCCTGTCTTATTCATCCATAGGAAACCTGGTTCCAAATGGATGGACATCATCAAATGTTGCAAACTTGGCCAATCTTGATTACACTTCCTCTAATTGTAGTAATGAGCTATCACTAAGTCTTGCAACATCTCCAACCACAGGTCAGTGCTCAGAGATGAGCTGTTCTGGCTTAACCCATAGCATGAGTGGAACAAGATCAGGCTTGGAGCAAGCCTCATGCAGCAGTATGGAACTGTCTATGAGTTTGGGTCCTAATAAAAATGTTCAGTTTTCACCAGCAATCCTGGGATCAAGATACCTTGCAGGAATTCAGGAGATACTTGTTCAAATTGCAACATATTCTTTTGAAAATCTTGAAGGGATAAATTATCCAGTTGCTGGGGTTAGAGCAGGAGGAAATAGATCAACTTCAGCTTTCACACCCAAGAAAAGGATAGTGACAAATCACAATGCAAATTCTATGTTTGAAGCACATGCAGAATCTCCATTGCAAAGACAAGCTTCTGAATCAAACAAATCCCAACTGCTTATGCTTCTACAGCTGGTGGACAGTAGGTATAGTCAGTGTTTGGATGAGATTCATACTGTTGTATCTGCATTCCATGCTGCTACTGAGCTGGACCCACATACACATGCACATTTTGCTCTTCAAACTATCTCTCTACTATACAAGGACTTGAGAGAGAGGATTAGCAATCATATTCTTGCCATGGGATTCAATTTTAACAGCTCATGCTCAGAAGAGGACAAGGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGTTTGCCAGAAACATCTGTCTCAGTTCTACGTGCTTGGATGTTTCAGAATTTCCTTCATCCGTATCCCAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCTATGATTGAGGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTCGAGATGAAGAAGGAAAGGAGAGCAGTCATAGAAGCATGATAAGCATAGACAATCAAATGTTTAATATCAATTGA 1620 0.4062 MSMENDMYSAPLDMACPNSTVIGDITQHLTPKQLIYCNSFDLNNQNHIISGIPILAGEQGKTIGGDASSPIDNTDFQEHLAGARPIPSASLPARIGLQENLENSAALSPSVGSLETLGSYIFNNWQDTSNPLAATFVDSGYEVPGNGKWNVNKFLKAQEIDGTEFLSYSSIGNLVPNGWTSSNVANLANLDYTSSNCSNELSLSLATSPTTGQCSEMSCSGLTHSMSGTRSGLEQASCSSMELSMSLGPNKNVQFSPAILGSRYLAGIQEILVQIATYSFENLEGINYPVAGVRAGGNRSTSAFTPKKRIVTNHNANSMFEAHAESPLQRQASESNKSQLLMLLQLVDSRYSQCLDEIHTVVSAFHAATELDPHTHAHFALQTISLLYKDLRERISNHILAMGFNFNSSCSEEDKEWSVETSFIQKQWALQQLKRKDQLWRPQRGLPETSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRDEEGKESSHRSMISIDNQMFNIN* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02072 539 Pfam Homeobox KN domain 457 496 IPR008422 GO:0003677|GO:0006355
Rops9g02072 539 Pfam Associated with HOX 259 396 IPR006563 -
Rops9g02072 539 Gene3D - 435 515 - -
Rops9g02072 539 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 208 519 - -
Rops9g02072 539 SMART HOX_1 440 504 IPR001356 GO:0003677
Rops9g02072 539 SUPERFAMILY Homeodomain-like 441 509 IPR009057 -
Rops9g02072 539 CDD homeodomain 440 501 IPR001356 GO:0003677
Rops9g02072 539 ProSiteProfiles 'Homeobox' domain profile. 437 500 IPR001356 GO:0003677
Rops9g02072 539 SMART prehox3 253 397 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02072 Rops-Chr9 38075974 38078844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02072 199 513 Homeobox Transcription Factor Family AT4G32980 56.740 1.49e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops9g02072 POX 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02072 - - gmx:100812648 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02072 9 38075974 38078844 Rops9g02072 9 38075974 38078844 ECH
Rops9g02072 9 38075974 38078844 Rops10g01225 10 24784967 24788017 PCT