Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02060 ATGACTCCTGTTTCTCTGAACCCACCTGGTCCTTCCATAGGTCAAAACCGACTCTTCATTTCTCCTAATAATCAGGACTGTCCTACCTTATTTAACATACTTGATCGAAAACAAATCATAGAAATTGGAGAGTTTAGAGAAAATGATAATCAGGATGATAAGCTTGTGGTGCATGATGGAGCATCAAGCAATCATCAACTTTGCAATTCATCCTTCATTTCACCTCAGCCAGTAAAGGATGATCCAAACAACACATGTGACCCTAATTTATCCTTCTCCAAAATGGAGGAGGAAGATAGCAAAAACGGTCACGGGTCTGCAAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGACCAAGTAGCAGTAGTCCAGCCAATGACAAAGCAATCAATACTACTATTTCTACTACTCCAACTCCAAGATTCCAAAATCAAGGGCATGAAAACAGGTACAGCCAAAGAAGCCCTCGTAATAACAGCAATAGCAGCACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAATGGTCCTAAGTCACTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTGGCCACTTCAGTAAATTCAACATCTACAAAGATCAGAGTGCATAACAAGGAAAAGAAGCCTCGTACAAACCATTTTGCACAGTTCAAGAATAAGCACAAGTCCACTACTACTACTCCTACTACAGCAGGATCATCTCAAGGGGTAAGGAAGCTTGAATATTTCAAGGACTTGACAATAAGTTTGAGGAATAACTCAGCTTTTCATCAAGTGTTTCCACGTGATGAAGTAGCTGAAGCAGCACTGCTTCTGATGGATTTATCTTGTGGTTTTGTTCACTCTTAA 924 0.408 MTPVSLNPPGPSIGQNRLFISPNNQDCPTLFNILDRKQIIEIGEFRENDNQDDKLVVHDGASSNHQLCNSSFISPQPVKDDPNNTCDPNLSFSKMEEEDSKNGHGSAKWMSSKMRLMKKMMRPSSSSPANDKAINTTISTTPTPRFQNQGHENRYSQRSPRNNSNSSTRVCSDCNTSSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANGLATSVNSTSTKIRVHNKEKKPRTNHFAQFKNKHKSTTTTPTTAGSSQGVRKLEYFKDLTISLRNNSAFHQVFPRDEVAEAALLLMDLSCGFVHS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02060 307 CDD ZnF_GATA 170 207 IPR000679 GO:0006355|GO:0043565
Rops9g02060 307 SMART GATA_3 165 216 IPR000679 GO:0006355|GO:0043565
Rops9g02060 307 Gene3D - 165 253 IPR013088 GO:0006355|GO:0008270
Rops9g02060 307 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Rops9g02060 307 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 48 307 - -
Rops9g02060 307 ProSiteProfiles GATA-type zinc finger domain profile. 165 201 IPR000679 GO:0006355|GO:0043565
Rops9g02060 307 MobiDBLite consensus disorder prediction 123 185 - -
Rops9g02060 307 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Rops9g02060 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 205 - -
Rops9g02060 307 MobiDBLite consensus disorder prediction 121 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02060 Rops-Chr9 37855053 37857134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02060 103 306 C2C2-Gata Transcription Factor Family AT4G26150 35.965 2.35e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops9g02060 GATA 9.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02060 - - gmx:100780326 332.798