Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02052 ATGAAGAAAGGTTTGGTGGTGGATGAAAGTATGTCCAATTTAACATCTGCATCAAGTGAAATAAGTGCTTCTTCAGGAACCAGGAATGACAATGGTTCTATCTATACTCAATACTCCTCCACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAGTCTTCCAGGCCACCCAGACCCTGAGGCTGAAGTGATAGCCTTGACTCCCAAGACCCTCTTGGCAACAAACCGGTTCATTTGTGAGATTTGTAACAAAGGGTTTCAAAGGGATCAGAATCTACAGCTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAAGAAAAGAAACTGCAAAGAAACAAGAAAGAAAGTATATGTGTGCCCAGAGCCAACATGTGTTCACCATGACCCATTAAGGGCACTAGGGGACCTCACTGGAATCAAGAAACACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAGCGTTATGCAGTTCAATCGGATTGGAAAGCTCACTCCAAAATTTGTGGCACCAGAGAGTATAAATGTGACTGTGGAACCATTTTCTCTAGGAGGGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGCTAGAACAATCACAGCAGTGCCAGTGAACCCTTTTCTCCCTTCTTACACCCCACTTCTTCATAGTCATGGCCTTCAAACACTATCAATGAAAAGAGAACAAGAGTTCAATTTAATACCACAAACTCCATCATGGTTGGCTTACTCACAACCATTATTCCCAACACATTTGGACCAGTCTATAGTCCACCATGAAAACCCTAACCCTACTACTACTTCTTTGCTTCCTTCTTTCAACTCCACTGTTACTCCTCACATGTCTGCCACTGCTTTGTTGCAAAAAGCATCACAAATAGGTGTAACAGTGAGCAAAAACACACCATCTCCATCCATGCTTAGACCCCACTTGCAGCAGGCTCACGTGCATGAAATGGATTCATCTTTAGCTGTTTGTGGAATGGTTATGCCTTCACGTGAAGAAGTAGGAACTGGGTTTGTTCATGACTTGGAATCTTATGGGAATAAAGCTGCAATCACCTCTGATTACTTTGAAGAAGGTGCTGTTGCTGCCAACACAGAAACTGATCAAGCATGTTCTCTTTTCCATGCTATGATGGCTACTAGTAGTAGTAGTACTGTGCCTTCTTCGGCTATGACTATGAGGGGAATGTTTGATCCAGCAAGAGATAATAACTTTCATGAACTATCAACACAATCCCAGTTTGGTAAAAGCAACAAGGGTGATGAAATGACAAGGGATTTTCTGAATGTTAGAGCATTTTCTCAAAGAGACTTCTTCAATGTAACTGGGCTTGATCCATTGGGTTAG 1398 0.4235 MKKGLVVDESMSNLTSASSEISASSGTRNDNGSIYTQYSSTSTNQEPQPKKKRSLPGHPDPEAEVIALTPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKKRNCKETRKKVYVCPEPTCVHHDPLRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESARTITAVPVNPFLPSYTPLLHSHGLQTLSMKREQEFNLIPQTPSWLAYSQPLFPTHLDQSIVHHENPNPTTTSLLPSFNSTVTPHMSATALLQKASQIGVTVSKNTPSPSMLRPHLQQAHVHEMDSSLAVCGMVMPSREEVGTGFVHDLESYGNKAAITSDYFEEGAVAANTETDQACSLFHAMMATSSSSTVPSSAMTMRGMFDPARDNNFHELSTQSQFGKSNKGDEMTRDFLNVRAFSQRDFFNVTGLDPLG* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02052 465 Gene3D Classic Zinc Finger 59 126 - -
Rops9g02052 465 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Rops9g02052 465 MobiDBLite consensus disorder prediction 9 50 - -
Rops9g02052 465 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Rops9g02052 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Rops9g02052 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 29 451 IPR031140 -
Rops9g02052 465 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Rops9g02052 465 Gene3D Classic Zinc Finger 135 213 - -
Rops9g02052 465 FunFam protein indeterminate-domain 12-like 58 126 - -
Rops9g02052 465 MobiDBLite consensus disorder prediction 1 62 - -
Rops9g02052 465 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Rops9g02052 465 SMART c2h2final6 155 175 IPR013087 -
Rops9g02052 465 SMART c2h2final6 79 101 IPR013087 -
Rops9g02052 465 SMART c2h2final6 120 150 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02052 Rops-Chr9 37755053 37757805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02052 7 313 IDZ Gene Family AT1G55110 56.047 4.06e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops9g02052 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02052 K25870 - vvi:100257789 560.451