Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02027 ATGGGTTGGGGTCACCTCGGAAGACATGGCTCAGATTCCGGCGACGCCGGTCCCAGCACCACCACGGAACCACGGTGGTTCCCGTTGGCGGCTCAGCCAGAAATGATGCGAGCCGCTGAAAAAGATGATCAATATGCCTCATTCGTTTACGAAGCCTGTCGTGACGCTTTCCGCCACCTCTTCGGTACCAGAGTTGCGGTTGCTTATCAAAACGAGACAAAACTTTTAGGGCAGATGCTTTACTATGTGCTCACAACAGGTTCAGGACAACAGACCCTTGGAGAGGAATATTGTGACATCACTCAGGTTGCAGGACCTTATGGACTTCCTCCTACCCCTGCGAGGCGTGCACTTTTCATTGTATACCAGACGGCTATTCCATATATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGAGGCATTGTCCTTGCTGACTCAGAGTCTGCTGAGAGTTATGGTGAAAATGCCCACAGGAGCAGTAGTTCTCAGATTTCTGCCATGAGTGAGCATCCTCCTTTGTCCACATCAGGACAATCTGTTACAACTCTGACAAGGTTGAAGGACAAACTGAGTGGATTTTGGTTACATGTGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTGTTGCAGTTGGTTCTTCGTGCTAACCTCATGTTGTTCTACTTTGAAGGCCTCTACTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATCGCTGGTTCAGTTCATCAGGCATCCTATGCAACCCACCATACATCAGGAGGACATGGTTTGCCTGTTTTAAATGAAGAAGGTAGTTTGGCATCTCCAGATACTGACAAAGGAAGTTGGGTCTCTGAATCTTCATCTTCCGAGTATCATGCAACTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCTACAGCTACTCCCTGTGGCCATGTATTTTGTTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTAGTTTGTGTTTATCATTCGGACTTCTAG 1182 0.4662 MGWGHLGRHGSDSGDAGPSTTTEPRWFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIAERISSRIASRGIVLADSESAESYGENAHRSSSSQISAMSEHPPLSTSGQSVTTLTRLKDKLSGFWLHVVQRWPTMLPFVRELLQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEGLRRRNFTSIAGSVHQASYATHHTSGGHGLPVLNEEGSLASPDTDKGSWVSESSSSEYHATSGVSKCTLCLSNRQHPTATPCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02027 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 390 IPR013083 -
Rops9g02027 393 SMART ring_2 339 376 IPR001841 -
Rops9g02027 393 FunFam Peroxisome biogenesis factor 10 314 390 - -
Rops9g02027 393 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Rops9g02027 393 ProSiteProfiles Zinc finger RING-type profile. 339 377 IPR001841 -
Rops9g02027 393 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 28 391 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Rops9g02027 393 MobiDBLite consensus disorder prediction 1 25 - -
Rops9g02027 393 SUPERFAMILY RING/U-box 338 382 - -
Rops9g02027 393 CDD RING-HC_PEX10 337 388 - -
Rops9g02027 393 Pfam Pex2 / Pex12 amino terminal region 42 276 IPR006845 -
Rops9g02027 393 Pfam Zinc finger, C3HC4 type (RING finger) 338 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02027 Rops-Chr9 37356193 37360873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02027 282 389 C3H Transcription Factor Family AT3G58030 30.088 4.52e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02027 K13346 - gmx:100783914 719.153