Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02013 ATGGAGGAGATGTTGTTTATAGTTACAGTGCCATTAAGAGTAGGTAATTCAGTCTGTGATAACCCAACCATAGCTACCCACATGGATGTATCCAGATTTAAGGCGATGGCAGATGCAGGGTCGTTATCTAATTCTGTAACTAAGGTTACCACTGAGAGGGTTGCAGGTTCGGATGATGGTAATAATGGTGGCAATTTGGGGGATGAAGTTGGTATTACAGAAGTCACAACACAAGAACAGAATAGGGAGGGAGAAAGTCCTTTGTTGGATATGATATCCCAAAATAAAAGCACTTTGGTTGCTGATGATGTAGCTTTAACCCAAGAAATTGAGGAGGATGATTCCATATCATTAGAAGGTGACCAGTTTATTGATAGCTCATGTTCTCTTTCAGTAGTCAGTGAGAACAGTAGTATATGTGGAGAGGAGTTCATCATTTCTGATGCTACTTCAGATGTTGGGACACCGTGTTCCATAGACATAGAGAAGAGCATCTGTCCTGTCAATATTGTTGCTCAGGCTGCTGATTTGGGGGAGTCAAATGTTGACACAGATATTATGAGTGAACCCCTTGCGGTGGCAGTGAGCCTTGATGAAGAGACTGGAGTTGGATCTGGCCCAAAGCCTTCTACAGATGATCTTCATCAGCTGCCTCAGGAAAAGCGGGTGAATGTAACAGTTGGTCGGAGTGTTTTTGAATTAGATTATACCCCACTTTGGGGGTTCATATCTCTGTGTGGGAGAAGACCTGAAATGGAAGATGCAGTTGCAACTATACCTCGATTTATGAAAATTCCTATTCAAATGCTAATCGGCAATCGGGTACTTGATGGAATAAATGAGTGTTTTAGTCAGCAGATGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAAGTATTGTCGTGATCGTATCCATTTAGCCTTGGGTGAGGAAATAGATTTTGTCAAGGAAGTTGGAGGAAAAGTTAATAATGAACCTGTTGCCCCAGAAACTGTTGGCTCCACTGCTGTTGTTGCTGTTATCTGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGCAAAGAACCCATGGCATTATCAGTGGACCATAAACCAAACCGAGATGATGAGTATGCAAGAATTGAGGCAGCTGGAGGAAAGGTTATACAATGGAATGGCCATCGTGTGTTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATTTGAAACCATGGATTATTCCAGAACCAGAAGTCAGGTTTCTTCCTCGCGCGAAAGAAGACGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTCATGTCAAATGAGGAGGCATGTGACCTGGCGCGGAAACGAATACTTCTCTGGTACAAGAAAAATGGCTTGGAACTACCCTCTGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCAGCAGAGTACCTATCAAACCGTGCTCTTCAGAAAGGAAGCAAAGATAACATCACAGTGATTGTGGTGGATTTGAAACCTCAAAGGAAATATAAGAGCAAGACATGA 1575 0.4317 MEEMLFIVTVPLRVGNSVCDNPTIATHMDVSRFKAMADAGSLSNSVTKVTTERVAGSDDGNNGGNLGDEVGITEVTTQEQNREGESPLLDMISQNKSTLVADDVALTQEIEEDDSISLEGDQFIDSSCSLSVVSENSSICGEEFIISDATSDVGTPCSIDIEKSICPVNIVAQAADLGESNVDTDIMSEPLAVAVSLDEETGVGSGPKPSTDDLHQLPQEKRVNVTVGRSVFELDYTPLWGFISLCGRRPEMEDAVATIPRFMKIPIQMLIGNRVLDGINECFSQQMTHFFGVYDGHGGSQVAKYCRDRIHLALGEEIDFVKEVGGKVNNEPVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVRFLPRAKEDECLILASDGLWDVMSNEEACDLARKRILLWYKKNGLELPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKPQRKYKSKT* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02013 524 SMART PP2C_4 229 512 IPR001932 -
Rops9g02013 524 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Rops9g02013 524 Gene3D - 226 524 IPR036457 -
Rops9g02013 524 ProSiteProfiles PPM-type phosphatase domain profile. 239 514 IPR001932 -
Rops9g02013 524 PANTHER PROTEIN PHOSPHATASE 198 514 IPR015655 GO:0004722|GO:0006470
Rops9g02013 524 CDD PP2Cc 244 514 IPR001932 -
Rops9g02013 524 Pfam Protein phosphatase 2C 276 507 IPR001932 -
Rops9g02013 524 SUPERFAMILY PP2C-like 228 516 IPR036457 -
Rops9g02013 524 FunFam Protein phosphatase 2C 50 315 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02013 Rops-Chr9 37158277 37163325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02013 1 524 PP2C-type Phosphatase Gene Family AT1G17550 44.602 2.74e-149 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02013 K14497 - gmx:100805281 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g02013 9 37158277 37163325 Rops9g02013 9 37158277 37163325 ECH
Rops10g01253 10 25113110 25116717 Rops9g02013 9 37158277 37163325 ECH