Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops9g02011 | ATGTCGACGGTGTACGTTCTAGAACCACCGACGAAGGGGAAGGTGGTGGTGAACACCACGCGGGGCCCACTGGACATTGAACTGTGGCCCAAAGAAGCTCCCAAAGCCGTAAGAAACTTCGTCCAACTCTGCCTCGAAGGCTATTACGACAACACCATCTTCCACCGAATCATCAAAGACTTCCTCGTACAAGGTGGCGACCCCACCGCCACCGGAACCGGAGGTGAAAGCATTTATGGGGGTGTTTTTGCTGATGAGTTTCATTCGCGTCTGAAATTCAAGCACAGAGGTTTGGTTGCAATGGCCAATACTGGATCGCCGAATTCCAATGGTAGTCAGTTTTTCATAACTCTTGATCGATGTGACTGGCTTGATAGGAAGCATACGATTTTCGGAAAGGTGACAGGAGATACAATGTATAATCTGTTGAGACTTGGTGAAGTTGAAACGGATAAGAATGACCGGCCTTTAGATCAACCCCCAATGATATTATCGGTTGAGGTATTATGGAACCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAACCCCAGGTTAAAGCTACACCTGATACAGGCAATAAAGAGTCAAAGAAGAAAGGCATAAAAAATTTGAGCTTGCTTTCATTTGGGGAAGAAACTGAAGAAGAGGAAAAAGAATTGGCATTGGTGAAGCAAAAGATTAAGAGCAGTCATGATGTCTTGAATGATCCTCGCCTTCTAAAGGAAGAAACTCCTAATAATGATTTGAGTTCATCTGGTGGTAAATTGACAAGGGATCTGCAGTTATCTGTAAGGGATGCACTTAACTCAAAGAAAGAAGAGCCTCAGAAAGATTCAGAAGCTGGTTACTTGACTCATCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCCAAAAGCGGAAAGAATTGGGTGATCTCCCTCCCAAGCCAAAGTTGCAAAATGGAAGGGCCAGTTCCGAGGACCGTGGTACGTCAGCAGCCAGGTCTAGTGCTGTAAGTGATGATGAGGATAAACCAAGAGTGGACAAATTGTCCTTGAAGAAAAAGGGAATAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATACAGATTTGCAGCTATTGAATGAAGCTGAGAGAGGAAGACAGTTGCAGAAGCAGAAGAAACGAAGACTTCATGGGCGCGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAGAATGCTTTCTCAGCGAAGGCTGCAACGCCTACAACTGGTGAATCTGAACATGTTAAGGATGAGGAATTATCTGACTGGAAAAGTGTTACCTTAAAATTTACTCCCGAGTCTGGCAAGGACCGCATGTCACGCAATGAGGACCCAAATGATTATGTTGTGCATGACCCTCTTTTAGAGAAGGGTAAAGAGAAGTTCAATAGGATGCAAGCCAAACAAAAGAAACGAGAAAGAGAGTGGGCTGGGAGATCCCTTACTTGA | 1494 | 0.4404 | MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKDFLVQGGDPTATGTGGESIYGGVFADEFHSRLKFKHRGLVAMANTGSPNSNGSQFFITLDRCDWLDRKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDQPPMILSVEVLWNPFEDIVPRTLQKPQVKATPDTGNKESKKKGIKNLSLLSFGEETEEEEKELALVKQKIKSSHDVLNDPRLLKEETPNNDLSSSGGKLTRDLQLSVRDALNSKKEEPQKDSEAGYLTHLDSSDDDEADFDARMRMQILQKRKELGDLPPKPKLQNGRASSEDRGTSAARSSAVSDDEDKPRVDKLSLKKKGIGSEARAERMANADTDLQLLNEAERGRQLQKQKKRRLHGREDEVLAKLEKFKNAFSAKAATPTTGESEHVKDEELSDWKSVTLKFTPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMQAKQKKREREWAGRSLT* | 498 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 341 | 371 | - | - | |
| Rops9g02011 | 497 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 22 | 156 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 15 | 167 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 54 | 66 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 126 | 141 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 98 | 113 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 113 | 125 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 28 | 43 | IPR002130 | GO:0000413|GO:0003755 | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 237 | 295 | - | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 266 | 295 | - | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 181 | 200 | - | - | |
| Rops9g02011 | 497 | FunFam | Peptidyl-prolyl cis-trans isomerase CWC27 homolog | 1 | 180 | - | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 245 | 259 | - | - | |
| Rops9g02011 | 497 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 11 | 218 | IPR044666 | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 449 | 497 | - | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 417 | 497 | - | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 425 | 439 | - | - | |
| Rops9g02011 | 497 | Gene3D | - | 2 | 183 | IPR029000 | - | |
| Rops9g02011 | 497 | CDD | cyclophilin_CeCYP16-like | 8 | 180 | - | - | |
| Rops9g02011 | 497 | MobiDBLite | consensus disorder prediction | 309 | 401 | - | - | |
| Rops9g02011 | 497 | SUPERFAMILY | Cyclophilin-like | 14 | 181 | IPR029000 | - | |
| Rops9g02011 | 497 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 49 | 66 | IPR020892 | GO:0003755|GO:0006457 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops9g02011 | Rops-Chr9 | 37112016 | 37117727 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops9g02011 | 9 | 173 | U-box Gene Family | AT5G67530 | 47.273 | 1.83e-41 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops9g02011 | K12737 | - | gmx:100793148 | 805.438 |