Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02008 ATGACCACTAAAAAGATTACATGGAAGTCTATGATCTTGATCTTAAGTTGTTACAAGAGTAAATATCCATTGGAGGAATCAGAGAAACAGGTTTTGAAACAAGGTTCTTTCCAGAGGTTATGTCTATCAGATATTAGCAATTCAAGCTCCAGTCAGGCCATTGAAGATATTTCAATTTCACTGGTTGGTTCAAAACTTCATGCATTCACCCTTGAGGAGCTAAGGGAAGCTACACATAATTTCTCATGGAGTAATATGCTTGGTGAAGGTGGGTTTGGACCTGTGTACAAGGGGTTTTTTGATGACAAACTTAGGCCTGGTTTGAAGGCTCAAACTGTAGCTGTGAAAAGCTTGGACTTGGATGGCTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTAAGGCATCCACATCTTGTTAAGTTAATTGGATACTGTTGTGAGGATGAACACAGGCTTTTGGTGTATGAATACATGCCTAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGATACTCTGCTGCCATGCCATGGTCAACCAGAATGAAAATTGCATTGGAAGCAGCTAAGGGCCTGGCTTTCCTTCATGAAGCAGATAAACCTGTAATTTATAGGGATTTCAAAGCTTCAAACATCTTATTAGACTCAGATTATACAGCTAAACTCTCAGATTTTGGACTAGCTAAGGATGGCCCTGAAGGGGAAGACACACATGTAACAACACGCATAATGGGAACACATGGTTATGCCGCTCCTGAGTACATCATGACAGGTCACCTCACAACCAAAAGCGATGTGTATAGCTATGGAGTTGTGCTGTTGGAACTGCTTACAGGAAGAAGGGTAGTGGATAAGTCACGTTCAAATCCAGGGAAGAGCTTGGTGGAATGGGCAAGGCCTATGTTAAGAGATCAAAAAAAGCTGCACCGTATCATAGATCGTAGACTTGAAGGGCTGTTTCCTATGAAAGGAGCCATGAAGGTTGCTATGTTGGCTTTCAAATGCTTAAGTCACCACCCAAATCCAAGACCCTCTATGAGTGATGTGGTGAAGATATTGGAGCCACTTCAGGACTTTGATGATGTTCTCATAGGACCATTTGTGTATGTTGCAGTAAACGAAAATGGTGAACAAAGATAA 1155 0.419 MTTKKITWKSMILILSCYKSKYPLEESEKQVLKQGSFQRLCLSDISNSSSSQAIEDISISLVGSKLHAFTLEELREATHNFSWSNMLGEGGFGPVYKGFFDDKLRPGLKAQTVAVKSLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALEAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEDTHVTTRIMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKSRSNPGKSLVEWARPMLRDQKKLHRIIDRRLEGLFPMKGAMKVAMLAFKCLSHHPNPRPSMSDVVKILEPLQDFDDVLIGPFVYVAVNENGEQR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02008 384 PANTHER OS01G0588500 PROTEIN-RELATED 51 362 - -
Rops9g02008 384 Gene3D Phosphorylase Kinase; domain 1 42 163 - -
Rops9g02008 384 Pfam Protein tyrosine and serine/threonine kinase 83 358 IPR001245 GO:0004672|GO:0006468
Rops9g02008 384 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
Rops9g02008 384 CDD STKc_IRAK 87 361 - -
Rops9g02008 384 FunFam Probable serine/threonine-protein kinase PBL8 164 372 - -
Rops9g02008 384 FunFam Serine/threonine-protein kinase BIK1 47 163 - -
Rops9g02008 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Rops9g02008 384 SUPERFAMILY Protein kinase-like (PK-like) 56 359 IPR011009 -
Rops9g02008 384 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02008 Rops-Chr9 37083749 37086430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02008 67 358 Glycoside Hydrolase AT3G07070 52.542 1.70e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops9g02008 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02008 - - gmx:100802636 682.174