Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g02002 ATGGTGAAACAGGGCATGGCTTCTACTACCATTACTAGTGCTACCAATGATCACAACAGATCTTGTGATGACTCTTGTTCAAATAACAACACTAGTAGTAGTAAATTGTATAAAGGGGTGAGGAAGAGAAAATGGGGCAAATGGGTGTCTGAGATAAGGCTTCCCAATAGCCGTGAGCGAATATGGTTGGGCTCTTATGACACTCAAGAGAAGGCTGCTAGAGCCTTTGATGCAGCCCTTTATTGTCTACGTGGTCGCCATGCTAGTTTCAATTTCCCTGATACCCCTCTCAACTTGGAGATCAATGACCATTCTCTTTCCCATCAGGAAATTCAAGAGGTTGCTGCAAAGTTTGCCAACGACCCACCAATGGAGCTGACTCAAGAAGAAGAAGAAGAAGAACCATCAGAGTCACAACATGGTGGTAATTCAATTGTGTCATTTGAATCCAATTCTAAATCCAATGACAGTGTAACAGAGAGTAGTACTTACCCTCTGTATGATTATGATGGGTCTGTGCAAGTGGACTGTGGGGACTTGAGGAACATGGATTGGACATTCTTGGATGACTTGAATGGGGTTGTTGGCTCCGATTTTGGCCTCTATTCTGTTCCAGATAAGATGCACTCGGGTGAGTTATTATATTCCACTCAACGACCAACACTTTTTGAGGATAATGCGGACGAAATTGAAATTGATGATGCTTTTTCTAACCATTCATTCCTTTGGAGTTGGAACTTTTGA 744 0.4247 MVKQGMASTTITSATNDHNRSCDDSCSNNNTSSSKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHASFNFPDTPLNLEINDHSLSHQEIQEVAAKFANDPPMELTQEEEEEEPSESQHGGNSIVSFESNSKSNDSVTESSTYPLYDYDGSVQVDCGDLRNMDWTFLDDLNGVVGSDFGLYSVPDKMHSGELLYSTQRPTLFEDNADEIEIDDAFSNHSFLWSWNF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g02002 247 MobiDBLite consensus disorder prediction 139 161 - -
Rops9g02002 247 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Rops9g02002 247 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Rops9g02002 247 MobiDBLite consensus disorder prediction 124 161 - -
Rops9g02002 247 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Rops9g02002 247 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Rops9g02002 247 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Rops9g02002 247 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Rops9g02002 247 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Rops9g02002 247 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Rops9g02002 247 MobiDBLite consensus disorder prediction 1 30 - -
Rops9g02002 247 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Rops9g02002 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g02002 Rops-Chr9 36950665 36952001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g02002 28 214 AP2-EREBP Transcription Factor Family AT1G74930 47.895 2.31e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops9g02002 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g02002 - - gmx:112999363 249.21